Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00935
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    28   0.078
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    28   0.10 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.42 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 0.078
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 388 PVARFKATLMQL*ETDLILTTPMLNQRAPLQTNPARKVWSR*TLQ 522
           P  R +A L    + D+I +TP+ N    L  +P ++ W R TLQ
Sbjct: 204 PTERLEA-LCWTQDEDIICSTPIGNLSHALLKDPVKEFWERRTLQ 247


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 388 PVARFKATLMQL*ETDLILTTPMLNQRAPLQTNPARKVWSR*TLQ 522
           P  R +A L    + D+I +TP+ N    L  +P ++ W R TLQ
Sbjct: 151 PTERLEA-LCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQ 194


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 56  PIGFPDTPNRITVAVGDRFGDDDSTTPRLPIEA--NGDLELIDRLSKLPVDKQPFWFINW 229
           P   PD    +   V +RFGDD  T  +LP++A    DL +  +L +    +QPF     
Sbjct: 34  PDYLPDRYRSVATQVFNRFGDD--TESKLPVKAITLPDLSIPMQLGR----RQPFSLF-- 85

Query: 230 QALEAHRK 253
             + AHRK
Sbjct: 86  --IPAHRK 91


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 119 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINW 229
           D+S T    I   G + L D++   P+D+ P W  N+
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNF 663


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 119 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINW 229
           D+S T    I   G + L D++   P+D+ P W  N+
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNF 663


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 105 SPTATVILLGVSGNPIGLDP 46
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 590 SIEMFSRQFLLLSLNNDLRTIGGCRVQRDHTF 495
           S E +S+  L+ + N D +T     V++ H F
Sbjct: 341 SREQYSQSHLISNENRDFQTTPTVSVEQPHLF 372


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 105 SPTATVILLGVSGNPIGLDP 46
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 FINWQALEAHRKTHKLTCR 274
           +++  AL+ H +TH L C+
Sbjct: 26  YVSLGALKMHIRTHTLPCK 44


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 195 LSTSNPSGSSTGKP*KRTGRPTNSRAEA*RIHRSHHAQSK 314
           L TS  SGS T  P       T S+ E   +   HH   K
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCK 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,333
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)