Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00935
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09510.1 68416.m01130 hypothetical protein                          29   2.4  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    28   5.5  
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ...    27   9.6  

>At3g09510.1 68416.m01130 hypothetical protein
          Length = 484

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 155 NGDLELIDRLSKLPVDKQPFWFINWQAL-EAHRKTHKLTCRGLTDS*IPSCP 307
           +G ++L  R+  LP+  +   F+ W+AL +A   T +LT RG+     PSCP
Sbjct: 153 HGSIDLKTRIWNLPIMPKLKHFL-WRALSQALATTERLTTRGMRID--PSCP 201


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 550 NDNNKN*RENISIDIFIRFHPNHENY 627
           NDN  N  EN+ + I + + P H +Y
Sbjct: 101 NDNKMNTTENVFVSIDVPYRPGHASY 126


>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
           subunit (GGT-IB) nearly identical to GI:11878247
          Length = 375

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 80  NRITVAVGDRFGDDDSTTPRLPIEANGDLE 169
           NR+++  G+ +G   S + + PI+ NGDL+
Sbjct: 100 NRVSLKDGEFYGFFGSRSSQFPIDENGDLK 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,511
Number of Sequences: 28952
Number of extensions: 289454
Number of successful extensions: 837
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)