Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00934
         (417 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.39 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.39 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   4.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   6.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 81  QADHPRQVQRHHQVAGFQPAGRQG 152
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 81  QADHPRQVQRHHQVAGFQPAGRQG 152
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 25 SMKSTMEDEKLKEKISDSD 81
          S+ S  EDE+++ ++SD D
Sbjct: 18 SLLSKKEDEEVEHRLSDRD 36


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 232 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 125
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 720 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 232 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 125
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 612 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 646


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 268 PEPEVPPPGLEALAPPS 318
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 78  RVRDLFLELLIL 43
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 286 PPGLEALAPPSRRSIKPTFHTTLKP 360
           PP  E L  P     +    TTL P
Sbjct: 108 PPNSEPLVSPKSEKEEKDMETTLTP 132


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 268 PEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 387
           P+ E+P P   +     + S+ PT   T  P     L  S
Sbjct: 73  PKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPS 112


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 310 PPSRRSIKPTFHTTLKPTCNNHL 378
           PP    I+P      +P CN  L
Sbjct: 95  PPIHHQIRPPILHDTQPMCNPQL 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,042
Number of Sequences: 336
Number of extensions: 1706
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)