Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00934
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 87 8e-19
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 87 1e-18
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 59 3e-10
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.22
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 28 0.67
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 4.7
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.2
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 6.2
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 24 8.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 8.2
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 87.4 bits (207), Expect = 8e-19
Identities = 38/73 (52%), Positives = 53/73 (72%)
Frame = +1
Query: 1 NALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNATIKWLDSNQLADKEEYEHKQKEL 180
N LESY +S++++++D LK+K+ SDK+ I TI+WLD N A K+EYE KQKEL
Sbjct: 538 NHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKEL 597
Query: 181 EGIYNPIITKMYQ 219
EG+ NPI+ K+YQ
Sbjct: 598 EGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 86.6 bits (205), Expect = 1e-18
Identities = 37/73 (50%), Positives = 54/73 (73%)
Frame = +1
Query: 1 NALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNATIKWLDSNQLADKEEYEHKQKEL 180
N LESY +S++++++D LK+K+ SDK+T+ TI+WLDSN A K+E+E KQKEL
Sbjct: 538 NHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKEL 597
Query: 181 EGIYNPIITKMYQ 219
E + NPI+ K+YQ
Sbjct: 598 ESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 58.8 bits (136), Expect = 3e-10
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +1
Query: 1 NALESYCFSMKSTMED-EKLKEKISDSDKQTILDKCNATIKWLD-SNQLADKEEYEHKQK 174
N LE+Y +S+K +D E+L K+ DKQ +LD +WL+ + A KEE+E +++
Sbjct: 568 NTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQ 627
Query: 175 ELEGIYNPIITKMY 216
+L+ + +PI K+Y
Sbjct: 628 KLDAVVHPITQKLY 641
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.22
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 58 KEKISDSDKQTILD-KCNATIKWLDSNQLADKEEYEHKQKELE 183
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.9 bits (59), Expect = 0.67
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 NALESYCFSMKST-MEDEKLKEKISDSDKQTILDKCNATIKWLDSNQLADKEEYEHKQKE 177
N +ES+ M S +E EK++ KISD+ + I ++ N A +E ++KE
Sbjct: 455 NHIESFFPIMSSPYVECEKMERKISDAFQHGRFFNILCKIMFIIDNNRASREYPIAREKE 514
Query: 178 LEGIY 192
+ IY
Sbjct: 515 ISLIY 519
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 34 STMEDEKLKEKISDSDKQTILDKCNATIKWLDSNQLADKEEYEHKQKELE 183
S E+EK E S K+ ++ + A K + + A+KE YE ++++L+
Sbjct: 190 SDAENEKEGEGAHKS-KREVMSEIIAKSKHYKAERQAEKERYEDEREKLD 238
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 265 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 387
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 25 SMKSTMEDEKLKEKISD 75
S+K MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 298 EALAPPSRRSIKPTFH 345
+ L P +RSIKP FH
Sbjct: 142 QTLIPSQQRSIKPPFH 157
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 268 PEPEVPPPGLEALAPP 315
P P PPPG+ PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,146
Number of Sequences: 5004
Number of extensions: 26002
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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