Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00934
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 256 RAEHPEP-EVPPPGLEALAPPSR 321
           R   P P + PPPG    APPS+
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQ 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  KSTMEDEKLKEKISDSDKQTILDKCN 108
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 268 PEPEVPPPGLEALAPPSRRSIKPT 339
           P P   PP +    PP     +PT
Sbjct: 375 PFPRFIPPNVYRFRPPLNPRFEPT 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,581
Number of Sequences: 438
Number of extensions: 2275
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)