Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00933
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   1.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   1.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   5.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.9  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 310 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGS 414
           GSG   D C + N   A  +R  E   +    QGS
Sbjct: 144 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS 178


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 310 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGS 414
           GSG   D C + N   A  +R  E   +    QGS
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS 179


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 310 GSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGS 414
           GSG   D C + N   A  +R  E   +    QGS
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGS 179


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 228 ASNTAIAARDPD 193
           ASN A++ RDPD
Sbjct: 7   ASNPAVSERDPD 18


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 19  WTYCTSRNCCHTAETNAVSLSRSYRGC 99
           W Y  SR   H +  +  S +  Y GC
Sbjct: 84  WVYYESRAHIHCSVKSESSQAAKYGGC 110


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 478 SILVRPTEAFRLWMWSLKRV 537
           SI +RP      + WSL R+
Sbjct: 559 SISIRPISTLGWFFWSLLRI 578


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 231 PASNTAIAARDPDPM 187
           PAS  ++ A DPD M
Sbjct: 102 PASQQSLDASDPDAM 116


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 231 PASNTAIAARDPDPM 187
           PAS  ++ A DPD M
Sbjct: 258 PASQQSLDASDPDAM 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,957
Number of Sequences: 336
Number of extensions: 3106
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)