Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00933
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 100 1e-22
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 50 3e-07
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 36 0.006
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 31 0.091
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.49
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 29 0.64
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.1
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 2.0
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 26 4.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 4.5
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.0
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.0
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 100 bits (240), Expect = 1e-22
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = +2
Query: 2 LQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPY 181
L L+T R V TA T+LK+ LFRYQGHIGA LVLGG D GPH++ I HGS DKLPY
Sbjct: 100 LHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPY 159
Query: 182 ATMGSGSLAAMAVFEAGWKRDM 247
+GSGSLAA++V E ++ D+
Sbjct: 160 VALGSGSLAAISVLETKYQPDL 181
Score = 69.3 bits (162), Expect = 4e-13
Identities = 45/93 (48%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Frame = +1
Query: 199 ISCGYGSV*--SRLET*Y----E*GEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPA 360
++ G GS+ S LET Y E E +LV++AI AGIFNDLGSGSN DL VI
Sbjct: 160 VALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKAT 219
Query: 361 QYLRTYEEANVKGKKQGSYRYALGTTAVLKQRV 459
Y R Y + N + KQ Y Y GTTAVLK+ +
Sbjct: 220 PY-RGYSKPNERATKQSKYTYDRGTTAVLKEDI 251
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 LQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGPHIYCIYPHGSVDKLP 178
+ R+ G V TAATL M ++ + + A L++ G D +TG +Y I GS+ K P
Sbjct: 89 MYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQP 148
Query: 179 YATMGSGSLAAMAVFEAGWKRDM 247
A GSGS +A ++ +M
Sbjct: 149 LAIGGSGSAFIYGFCDANFRENM 171
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 247
G AL++ G+D GP +Y P G+ + +GSGS A + + +DM
Sbjct: 139 GVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDM 190
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 31.5 bits (68), Expect = 0.091
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 247
G +L++ G+D GP +Y + P G+ +G S AA E + ++
Sbjct: 131 GVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDEL 182
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.49
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 329 STLEPEPKSLNIPAAIASRTSFFPSPHSYHVSNLLQTLP 213
S + P P S P S +F P P++++ N+ P
Sbjct: 132 SVIYPSPPSTYYPNMYVSANTFIPMPYAHYTDNMYHAKP 170
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 28.7 bits (61), Expect = 0.64
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 226
G ++ G D +GPH+ P G V + +MGS S +A E
Sbjct: 129 GVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 163 RSMRINAVNMRTGSVNTSQNQSSPYMTLIAKQH 65
+S+ + M+TGSVN +Q+Q M ++A Q+
Sbjct: 267 QSIPSGPMGMKTGSVNDTQSQQITLMNVLASQN 299
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 148 NAVNMRTGSVNTSQNQSSPYMTLIAKQHSFQQCGSSF 38
N + M+ S+ T + + +PY L+A + CGS +
Sbjct: 861 NIIPMQKPSLTTHETKQNPYDLLVALDSDRKACGSLY 897
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -2
Query: 381 FISS*ILGRASVTNNAQVNIRT*TQVIEYTSSNSISDKLFSFSSFISRFQPASNTAIAAR 202
FIS+ +G + ++ + N++ ++ E T SNS K + S S SNT+ +
Sbjct: 145 FISNEEVGIPATNSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSET 204
Query: 201 D 199
D
Sbjct: 205 D 205
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -2
Query: 495 WAYQNRFY--LERYYTLLKHSSCTKSISVRAL 406
WA+ N++ L+RY +LLK+++ + + VR +
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLI 1556
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 323 LEPEPKSLNIPAAIASRTSFFPSPHSYHVSNLLQTLP 213
L EPKS+ +P SRT++ S S V N + +P
Sbjct: 387 LYQEPKSIQLPELSVSRTTY--SAQSSSVKNCNERIP 421
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 376 YEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILVRP 495
YE NV+ K+ +Y++ V+ ++I E SIL P
Sbjct: 334 YETINVEETKKETYKFTRSIKTVIPNKLISNESISILSIP 373
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 396 GEKARLVQICSWYNCCA*AACNTSRGRIYFGTPNRSISPMDVEPQTS 536
G A+L Q C N C IY G P+D++P +S
Sbjct: 67 GPCAKLYQQCGGINYNGPTCCEPGSECIYNGPYYSQCIPVDIDPSSS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,741
Number of Sequences: 5004
Number of extensions: 49231
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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