Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00933
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 113 7e-26
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 43 2e-04
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 43 2e-04
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 40 0.001
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 38 0.004
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 33 0.22
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 33 0.22
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 31 0.66
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 30 1.5
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 28 4.6
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 28 6.1
03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430 28 6.1
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 27 8.1
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 27 8.1
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413... 27 8.1
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 113 bits (273), Expect = 7e-26
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 2 LQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPY 181
L R TGR V T+ TLLK LF YQGH+ AALVLGGVD TGPH++ +YPHGS D LP+
Sbjct: 103 LHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPF 162
Query: 182 ATMGSGSLAAMAVFEAGWKRDM 247
ATMGSGSLAAM+VFE+ +K +
Sbjct: 163 ATMGSGSLAAMSVFESKYKEGL 184
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 EGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKG-KKQGSYRYALG 432
EG +LV +AI GIFNDLGSGSNVD+CVI G +YLR ++ N + Y + G
Sbjct: 188 EGIQLVAEAIRGGIFNDLGSGSNVDVCVI-TKGKTEYLRNHQLPNPRTYVSSKGYNFTKG 246
Query: 433 TTAVLKQRVIPLE 471
T VL ++ L+
Sbjct: 247 QTVVLSTKITQLK 259
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGSVDKLPYAT 187
+ G+ V+ AA L++ + ++ + + A +++GG D+ G I+ + G++ + P+A
Sbjct: 93 IQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAI 152
Query: 188 MGSGSLAAMAVFEAGWKRDMN 250
GSGS + + WK M+
Sbjct: 153 GGSGSSYLYGLLDHEWKEGMS 173
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGSVDKLPYAT 187
+ G+ V+ AA L++ + ++ + + A +++GG D+ G I+ + G++ + P+A
Sbjct: 93 IQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAI 152
Query: 188 MGSGSLAAMAVFEAGWKRDMN 250
GSGS + + WK M+
Sbjct: 153 GGSGSSYLYGLLDHEWKEGMS 173
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 244
G ++LGG DR GP +Y I P G K A +G G AA G ++D
Sbjct: 133 GCGVILGGYDRDGPQLYMIEPSGLSYKYFGAALGKGRQAAKTCVYDGSRKD 183
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 226
G ++LGG DR GP +Y I P G K A +G G AA E
Sbjct: 141 GCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIE 185
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 247
G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 191 GVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 242
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 247
G +L++ G D GP +Y + P GS + MG A E + DM
Sbjct: 154 GVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 205
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 226
G L++ G+D +G H+Y P G+ + +GS S AA E
Sbjct: 131 GVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLE 175
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 92 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 247
G +L++ G D GP +Y P G+ + +GSGS A + + + + +
Sbjct: 149 GVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKSL 200
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Frame = -2
Query: 468 ERYYTLLKHSSCTKSISVRALLFPLHISFF--ISS*ILGRASVTNNAQVNIRT*TQVIEY 295
E YY S K S+ L++ FF ++S L + V N + +
Sbjct: 876 ECYYPWFAQSMVMKRASIEPKFHDLYLKFFVKVNSRFLNK-EVLKATYENCKILLRSDLI 934
Query: 294 TSSNSISDKLFSFSSFISRFQPASNTAIAARDPDPMV 184
SS+ L + S++ +F N A+ A++ DP V
Sbjct: 935 KSSSEERSLLKNLGSWLGKFTIGRNQALLAKEIDPKV 971
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +3
Query: 237 NVI*MRRRKKACP---RCYCCWY 296
N + + +K ACP RCY CWY
Sbjct: 134 NCLGLGHQKSACPGSTRCYNCWY 156
>03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430
Length = 90
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 59 KRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPH 157
K++ F +G L G DRT ++ IYPH
Sbjct: 56 KKVHFVAWNCLGTELASGSTDRTNSRVWRIYPH 88
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 57 SSVAAVSTGTVRPVCKRC 4
S V +V+T T+RP+C RC
Sbjct: 79 SPVESVTTATLRPICFRC 96
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 265 FFLLLIHITFPTCFKHCH 212
FFLL I + P F HCH
Sbjct: 24 FFLLRIQVQSPPLFSHCH 41
>02_01_0562 +
4129852-4130235,4130355-4130453,4131046-4131146,
4131229-4131300,4131712-4131802,4132005-4132085,
4132263-4132331,4132634-4132690,4132776-4132898,
4133000-4133038,4133255-4133380
Length = 413
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 498 CWAYQNRFYLERYYTLLKHSSCTKS 424
C+ + +FY E LLKHSS T +
Sbjct: 389 CYLFARKFYPEALNNLLKHSSYTST 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,874
Number of Sequences: 37544
Number of extensions: 334119
Number of successful extensions: 773
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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