Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00933
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   1e-18
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.072
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.13 
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_33372| Best HMM Match : LRV (HMM E-Value=7)                         28   6.3  
SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   27   8.3  

>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 43/64 (67%), Positives = 49/64 (76%)
 Frame = +1

Query: 256 EGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGT 435
           E K+LVRD IAAGIFNDLGSGSNVDLCVI   G   Y+R Y+ AN+KG++QG Y Y  GT
Sbjct: 3   EAKQLVRDGIAAGIFNDLGSGSNVDLCVITKDG-VDYIRPYDVANLKGERQGRYTYKRGT 61

Query: 436 TAVL 447
           T VL
Sbjct: 62  TVVL 65


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +2

Query: 65  MLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 244
           M F +QG      ++ G D+ GP +Y +   G+       ++GSGS  A  V ++G+K D
Sbjct: 146 MFFTFQG-----TMICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYD 200

Query: 245 MN 250
           M+
Sbjct: 201 MS 202


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -3

Query: 449 LSTAVVPRAYLYEPC--FFPFTLASS*VLRYWAGPVLRI----THRSTLEPEPKSLNIPA 288
           +S  V   A  + PC    P    S+  L ++  P L +    TH  T  P P+ L +P+
Sbjct: 311 MSLQVSTHALTFYPCPHLLPLPSPSTRALTFYPCPHLPVPSPSTHALTFYPRPQFLPMPS 370

Query: 287 AIASRTSFFPSPH 249
                 +F+P PH
Sbjct: 371 PSTRALTFYPCPH 383


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 471 GRIYFGTPNRSISPMDVEPQTSR*MLTINF 560
           G  Y GTPNR  +P ++ PQ    ++TI++
Sbjct: 217 GSYYLGTPNRVKTPGEIAPQYGIVLVTIHY 246


>SB_33372| Best HMM Match : LRV (HMM E-Value=7)
          Length = 311

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 422 YLYEPCFFPFTLASS*VLRYWAGPVLRITHRSTLEPEPKSLNIPAAIASRTSF 264
           ++Y+ C+   TL  + +    +   LR+ +++T  PE KS  + A  +SR SF
Sbjct: 76  FVYDFCY-KHTLIKAIISFSQSKKALRVKNKNTRSPERKSQRLNALESSRLSF 127


>SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 188 WLHMVIYLQIHEDKCSKYEDRFCQHLPKPEQPLYDLDSETAF 63
           WL M I    +EDK   +   F +HL K E P+  LD+E  F
Sbjct: 53  WLEMKISAAKYEDKIPPFWSDFLKHL-KQEYPVV-LDNEINF 92


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 183 QPWDPDLLRLWQCLKQVGNVI*MRRRKKACPRCY 284
           Q W P+  R +  L Q  ++I    RK+ CP+CY
Sbjct: 310 QTWSPE--RKFALLYQTASLI-QHYRKQTCPKCY 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,236
Number of Sequences: 59808
Number of extensions: 371503
Number of successful extensions: 1019
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)