Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00933
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.31 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 151 INAVNMRTGSVNTSQNQSSPYMTLIAKQHSFQQCGSSFYWYSTSSM 14
           ++A  +   +VN +Q  +SP  T  + QHS     +S    +TSSM
Sbjct: 43  LSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSM 88


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 489 YQNRFYLERYYTLLKHSSCTKSISV 415
           Y N    E++ + LKHS+  K + +
Sbjct: 101 YSNMLNSEKHASFLKHSNIVKVLMI 125


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 379 HKFLDIGQGQCYE*RTGQH*NLNPSH*IYQQQ 284
           H  +   QGQ       QH   +  H +YQQQ
Sbjct: 176 HPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQ 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,360
Number of Sequences: 438
Number of extensions: 3321
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)