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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00932
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    29   2.4  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    29   2.4  
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    29   3.2  
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    29   3.2  
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ...    29   4.3  
At5g08020.1 68418.m00933 replication protein, putative similar t...    29   4.3  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   4.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   4.3  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    29   4.3  
At1g44770.1 68414.m05129 expressed protein                             29   4.3  
At1g26700.1 68414.m03252 seven transmembrane MLO family protein ...    29   4.3  
At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent phos...    28   5.7  
At5g23700.1 68418.m02778 hypothetical protein                          28   7.5  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    28   7.5  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    28   7.5  
At1g46696.1 68414.m05216 hypothetical protein slight similarity ...    28   7.5  
At1g35180.1 68414.m04362 expressed protein similar to hypothetic...    28   7.5  
At1g35170.1 68414.m04361 expressed protein                             28   7.5  
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t...    28   7.5  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   7.5  
At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2) ident...    27   9.9  
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat...    27   9.9  
At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa s...    27   9.9  
At5g06530.2 68418.m00737 ABC transporter family protein                27   9.9  
At5g06530.1 68418.m00736 ABC transporter family protein                27   9.9  
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic...    27   9.9  
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic...    27   9.9  
At1g77400.1 68414.m09013 expressed protein                             27   9.9  
At1g32000.1 68414.m03937 hypothetical protein                          27   9.9  

>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 530 PTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 709
           PTL   AV+       NTTS  + + +    PSEPF  S T    +   +   + D  T 
Sbjct: 305 PTLQGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTIPPYILPSSDALY-DPFTD 363

Query: 710 MEN 718
           +EN
Sbjct: 364 IEN 366


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = +2

Query: 470 PECKNEEVANGFGARPPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSE 649
           P C     A      PPV SPT + S+    P I  ++ +VS   P      S P S S 
Sbjct: 119 PNCDVSTPAASTPVSPPVESPTTSPSSAK-SPAITPSSPAVSH-SPPPVRHSSPPVSHSS 176

Query: 650 TPTALVTAKTPKTFP 694
            P +  +  T ++ P
Sbjct: 177 PPVSHSSPPTSRSSP 191


>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 625 WGNRTRGQHPRDRCSIYGNLRDE 557
           +G+R R  HPRDR ++ G +R E
Sbjct: 46  YGSRCRFNHPRDRGAVIGGVRGE 68


>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 625 WGNRTRGQHPRDRCSIYGNLR 563
           +GNR R  HPRDR S+   +R
Sbjct: 62  YGNRCRYNHPRDRASVEATVR 82


>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 456

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 625 WGNRTRGQHPRDRCSIYGNLRDE 557
           +G+R R  HPR+R  + G LR E
Sbjct: 59  YGSRCRFNHPRNRAPVLGGLRTE 81


>At5g08020.1 68418.m00933 replication protein, putative similar to
           replication protein A1 [Oryza sativa] GI:2258469;
           contains InterPro entry IPR004365: OB-fold nucleic acid
           binding domain
          Length = 604

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 146 VVRVETEVVGAFEGLLGHTTPRAAANTNKHLEFILRTKSWHESSG 12
           V+ +++  VGAF+G+   T  R+    N +     + KSW+++ G
Sbjct: 357 VIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEG 401


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 497 NGFGARPPVR--SPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVT 670
           N + A PP R  SP +A    T  P++A       R     T++P  P  R+E P +L +
Sbjct: 86  NPYSASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-S 143

Query: 671 AKTPKTFPD 697
            K P    D
Sbjct: 144 PKPPSPRAD 152


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 497 NGFGARPPVR--SPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVT 670
           N + A PP R  SP +A    T  P++A       R     T++P  P  R+E P +L +
Sbjct: 85  NPYSASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-S 142

Query: 671 AKTPKTFPD 697
            K P    D
Sbjct: 143 PKPPSPRAD 151


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +3

Query: 336 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 479
           TAS++ K + T       S T+    PP+    P  P   SP +AC ++R R A
Sbjct: 11  TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64


>At1g44770.1 68414.m05129 expressed protein
          Length = 271

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 402 REASPFQQFQKTSHLFSSGKMPYSLEQWGVEIGG 301
           +E +   +  K   ++ +GKM Y+L  WG+  GG
Sbjct: 212 QEVTALSKVGKVVDIWHAGKMFYTLSTWGLAFGG 245


>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
           MLO-like protein 14 (MLO14) identical to membrane
           protein Mlo14 [Arabidopsis thaliana]
           gi|14091598|gb|AAK53807; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 554

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 201 CGNGLAFDATDSKYLTE-NATTFTTLSAERGHSLSPQSPLPTVRDC 335
           CGN  + +    +     ++TTF+ L  E   SLS  S LP  R+C
Sbjct: 509 CGNSSSVETPILRPCASISSTTFSRLQTETTDSLSRSSSLPMRREC 554


>At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase-related /
           phosphoglyceromutase-related contains weak similarity to
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
           (Swiss-Prot:Q59007) [Methanococcus jannaschii]
          Length = 495

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = -3

Query: 466 LISPHADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIR-EDAVQSRTVGSGDWG-LKL 293
           L +P A      +  S A  IA   S P  P     VF+  ED  +       D+G L +
Sbjct: 278 LEAPGATGDYRTLLTSKATAIANALSAPLNP--CPNVFVPGEDGHKPGRSDGYDFGFLHI 335

Query: 292 CPLSALNVVKVVAFSVKYLESVASKARPLPQVFSSATPLSHFQY 161
             +      K   F V+ LE+V    R L ++   A   +H+QY
Sbjct: 336 KAIDDAGHDKATMFKVRGLEAVDKAIRQLAKLLWQAESSTHYQY 379


>At5g23700.1 68418.m02778 hypothetical protein
          Length = 572

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 425 AYDRESRVCMWADQVPECKNEEVANGFGARPPVRSP---TLARSAVTLIPKIAVNTTS-V 592
           A  R ++V    ++  E  +++  + F   PP   P   + AR   +  P I  N T  V
Sbjct: 57  AAQRLAKVMALQNKDNEEDDDDDDHEFKFAPPSSGPINGSFARRNRSHSPAIGRNITEQV 116

Query: 593 SRVLPASTVAPSEPFSRSETPTALVTAKTPK 685
           + V  +ST  PS  FSRS TP A      PK
Sbjct: 117 TSVRSSSTGRPST-FSRSSTPNASPLWMPPK 146


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 294 SLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISA-APDLPTTESPASACG 458
           S    SP+PT+RD         +    GT G+ K   +S+   ++P        CG
Sbjct: 609 SWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCG 664


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 649 DADGTGNCEDPEDVPGCEDYYGELDLKRSA 738
           D DG G+ +   D+ G +D YG +D+   A
Sbjct: 111 DGDGDGDGDGSVDIDGDDDAYGSVDIDGDA 140


>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
           maebl (GI:20087019)[Plasmodium falciparum].
          Length = 616

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 596 RVLPASTVAPSEPFSRSETPTALVTAKTPKT 688
           R L  +   PS+  SR ETPT++   K P+T
Sbjct: 211 RSLEKTKYQPSDSGSRPETPTSVSAGKKPET 241


>At1g35180.1 68414.m04362 expressed protein similar to hypothetical
           protein GB:AAF69173 GI:7767676 from [Arabidopsis
           thaliana]
          Length = 231

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 340 AVQSRTVGSGDWGLKLCPL---SALNVVKVVAFSVKYL 236
           AV   T+   DW   +CP+   S+L  ++ +AFS+ Y+
Sbjct: 50  AVTLATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYM 87


>At1g35170.1 68414.m04361 expressed protein
          Length = 221

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 340 AVQSRTVGSGDWGLKLCPL---SALNVVKVVAFSVKYL 236
           AV   T+   DW   +CP+   S+L  ++ +AFS+ Y+
Sbjct: 50  AVTLATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYM 87


>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to lipid
           transfer protein GI:2627141 from (Picea abies); contains
           Pfam profile PF00234 Protease inhibitor/seed storage/LTP
           family
          Length = 180

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 264 FTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESP 443
           F  +   +  +L+ ++ L   + C A + +    T +GT  +  PPA    P   +T S 
Sbjct: 81  FNNVDMLKSLNLTKENALDLPKACGAKADVSLCKTSAGTNSSSTPPATPKTPPASST-ST 139

Query: 444 ASACGLIRFRSAKTKK*QTDSAP 512
            +  G     +  T K  T SAP
Sbjct: 140 GTGSGSTGNAAPSTAK-PTSSAP 161


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 451 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVGSGDWGLKLCPL 284
           AD+GLS+       L+  G  +PA+ + ++ +F RE     RTV + +   + C L
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCAL 376


>At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2)
           identical to cytosine methyltransferase GI:7658293 from
           [Arabidopsis thaliana]
          Length = 626

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 248 RERDYLHNVECGERTQLEPP 307
           R+R Y+HN+    R Q++PP
Sbjct: 347 RKRGYIHNLPINNRFQIQPP 366


>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
           similar to 2-oxoglutarate/malate translocator precursor,
           spinach, SWISSPROT:Q41364
          Length = 557

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 306 QSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISA 413
           +SPLP      +S+L+K S+T +  + +  PP + A
Sbjct: 48  KSPLPVSLRRRSSTLVKASSTVASASSSPTPPLVPA 83


>At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa
           subunit, mitochondrial, putative similar to
           NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from
           {Homo sapiens} SP|P49821, {Bos taurus} SP|P25708,
           {Aspergillus niger} SP|Q92406; contains Pfam profile
           PF01512: Respiratory-chain NADH dehydrogenase 51 Kd
           subunit
          Length = 486

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 475 LRNLISPHADAGLSVVGKSGAALIAGGFSVPAVPENVAL-VFIREDAVQSRTVGSG 311
           L+ LI  H   G+     +  A+I GG SVP +P+N+   V +  DA+++   G G
Sbjct: 319 LKELIERHC-GGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLG 373


>At5g06530.2 68418.m00737 ABC transporter family protein
          Length = 691

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 466 GSGVQKRRSSKRIRRPAPGEVSNAGSFSR 552
           G G   R+SS+R+   +PG  S AG+  R
Sbjct: 50  GGGTLSRKSSRRLMGMSPGRSSGAGTHIR 78


>At5g06530.1 68418.m00736 ABC transporter family protein
          Length = 751

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 466 GSGVQKRRSSKRIRRPAPGEVSNAGSFSR 552
           G G   R+SS+R+   +PG  S AG+  R
Sbjct: 50  GGGTLSRKSSRRLMGMSPGRSSGAGTHIR 78


>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
           to gi_11935086_gb_AAG41963
          Length = 162

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = +3

Query: 294 SLSPQSPLPTVRDCTASSLMKT--SATFSGT-AGTEK--PPAISAAPDLPTTESPASACG 458
           ++SP +P P   +  A + ++    A  S T A T +  PPA S   D P+    A +  
Sbjct: 45  AISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSAD 104

Query: 459 L----IRFRSAKTKK*QTDSAPGP 518
           +    +     KTKK +T  APGP
Sbjct: 105 VPAPALTKHKKKTKKHKTAPAPGP 128


>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
           to gi_11935086_gb_AAG41963
          Length = 185

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = +3

Query: 294 SLSPQSPLPTVRDCTASSLMKT--SATFSGT-AGTEK--PPAISAAPDLPTTESPASACG 458
           ++SP +P P   +  A + ++    A  S T A T +  PPA S   D P+    A +  
Sbjct: 45  AISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSAD 104

Query: 459 L----IRFRSAKTKK*QTDSAPGP 518
           +    +     KTKK +T  APGP
Sbjct: 105 VPAPALTKHKKKTKKHKTAPAPGP 128


>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 518 PVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKT 688
           P+R   L+ S   L P ++  ++S      +  ++P  P S S TP+ L   +TP +
Sbjct: 48  PLRFKPLSHSQPLLPPALSPPSSSFISNSKSRPLSPLTPHSFSTTPSKLKPPRTPSS 104


>At1g32000.1 68414.m03937 hypothetical protein
          Length = 181

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 517 PGEVSNAGSFSRHAHPEDC---RKYYICLEGVAREY 615
           PG V       RH HPE+    R ++  LEG  R Y
Sbjct: 84  PGSVKYPADLLRHLHPEEAARFRYWFRTLEGQLRAY 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,665
Number of Sequences: 28952
Number of extensions: 382857
Number of successful extensions: 1355
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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