Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00931
         (368 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    37   0.13 
UniRef50_Q5U6B9 Cluster: DNA-directed RNA polymerase; n=3; Beta ...    32   2.9  
UniRef50_Q18HP8 Cluster: Transcription regulator; n=1; Haloquadr...    32   2.9  
UniRef50_UPI0000DAE475 Cluster: hypothetical protein Rgryl_01000...    32   3.8  
UniRef50_UPI0000D55D74 Cluster: PREDICTED: similar to CG3332-PA,...    32   3.8  
UniRef50_Q8R948 Cluster: Uridine kinase; n=9; Clostridia|Rep: Ur...    31   8.9  
UniRef50_Q8A0R8 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  
UniRef50_A3U9H7 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -1

Query: 221 EMIFSSQFYHHIILHQSTVHPY*LESCSSS 132
           EMI +S+FYH    H+S VHPY LE   SS
Sbjct: 897 EMIPASRFYHRTARHRSRVHPYYLEPLRSS 926


>UniRef50_Q5U6B9 Cluster: DNA-directed RNA polymerase; n=3; Beta
           vulgaris subsp. vulgaris|Rep: DNA-directed RNA
           polymerase - Beta vulgaris subsp. vulgaris
          Length = 598

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 127 FNISEHSLSDEPYTYWVYRKFQRVKRNKLLS 35
           FN S+  +  EPY+ WVY K ++ KR   LS
Sbjct: 456 FNTSQDYMVMEPYSLWVYDKLKKRKRKVTLS 486


>UniRef50_Q18HP8 Cluster: Transcription regulator; n=1;
           Haloquadratum walsbyi DSM 16790|Rep: Transcription
           regulator - Haloquadratum walsbyi (strain DSM 16790)
          Length = 221

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 151 WKAV--HPVIFNISEHSLSDEPYTYWVYRKFQ 62
           W A+  HP++  I + +L  EP+ YWV + +Q
Sbjct: 15  WTAIVEHPMVAGIGDGTLQAEPFKYWVRQDYQ 46


>UniRef50_UPI0000DAE475 Cluster: hypothetical protein
           Rgryl_01000373; n=1; Rickettsiella grylli|Rep:
           hypothetical protein Rgryl_01000373 - Rickettsiella
           grylli
          Length = 486

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 356 VFLLRNSYFLKATANILVGTFINVQHTLVLFLYCFIHFMKAF*EIEMIFSSQFY--HHII 183
           +FL+   +      N++    IN ++ L LFL   ++F+     I ++F  ++Y  HH  
Sbjct: 371 LFLMTCIFVSNIPMNLIHSDMINTKNVLRLFLSSSLYFLVLLSLISLLFRLRYYLPHHFS 430

Query: 182 LH 177
           LH
Sbjct: 431 LH 432


>UniRef50_UPI0000D55D74 Cluster: PREDICTED: similar to CG3332-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG3332-PA, isoform A - Tribolium castaneum
          Length = 605

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -2

Query: 124 NISEHSLSDEPYTYWVYRKFQRVKRNKLLS 35
           N+S  SLS+ P T  V+RKF  V+R+K+++
Sbjct: 194 NVSLKSLSENPETTTVFRKFLDVQRSKIIA 223


>UniRef50_Q8R948 Cluster: Uridine kinase; n=9; Clostridia|Rep:
           Uridine kinase - Thermoanaerobacter tengcongensis
          Length = 547

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 332 FLKATANILVGTFINVQHTLVLFLYCFIH 246
           F+KA   +L G  + ++H+L   LYC IH
Sbjct: 77  FIKAVKELLPGATVTIEHSLGKGLYCEIH 105


>UniRef50_Q8A0R8 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 631

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 169 QFIHTSWKAVHPVIFNISEHSLSDEPYTYWVYRKF 65
           +F  T+W+AV  +IF +    L D  YTYWV  KF
Sbjct: 291 EFFTTTWEAVDELIF-VKLRDLYD--YTYWVCPKF 322


>UniRef50_A3U9H7 Cluster: Putative uncharacterized protein; n=1;
           Croceibacter atlanticus HTCC2559|Rep: Putative
           uncharacterized protein - Croceibacter atlanticus
           HTCC2559
          Length = 177

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 353 FLLRNSYFLKATANILVGTFINVQHTLVLFLYCFIHFMKAF*EIEMIFSSQF 198
           F+ ++  F +A A +  GTFI +  TLV   Y FI F  A   +  I +  F
Sbjct: 96  FIPKHKLFKEAPAALYCGTFIGMTSTLVANGYLFIAFAGALGGLVYIIAKPF 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,126,174
Number of Sequences: 1657284
Number of extensions: 6041138
Number of successful extensions: 11456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11455
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)