Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00931
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0041 - 20169308-20169317,20169485-20170491                       27   4.6  
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213...    26   8.1  

>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 156 LAGKLFIQLFSISVNTHYQMNHIPIGCTENSKG*KGTNYY 37
           +AG LFI  FS+S   +  + H P+  T+ S   K   +Y
Sbjct: 217 MAGALFIYFFSVSGGMYGIIRHTPMFITDRSDPNKLVFFY 256


>03_05_0700 +
           26920743-26920771,26920880-26920991,26921205-26921306,
           26921391-26921503,26921858-26921927,26922348-26922425,
           26922500-26922616,26922738-26922832,26923080-26923159,
           26923405-26923532
          Length = 307

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 25  HDFKIVVCSFSPFGIFCTPNRYM 93
           HD  I+ C  SP   FC PNRY+
Sbjct: 221 HDGYILKCLLSPE--FCDPNRYL 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,929,952
Number of Sequences: 37544
Number of extensions: 148854
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)