Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00931
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   3.6  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              27   3.6  

>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 362 KIVFLLRN-SYFLKATANILVGTFINVQHTLVLFL 261
           K VF+L +  Y L     I    F+NV HTL +FL
Sbjct: 517 KFVFILSHLMYLLCILRCIFSSAFLNVGHTLAMFL 551


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 345 KEFLFPESHC*HIGWDLYKCTTYFSAIFILFHSL 244
           K+F  P   C +I W L  C    SA F  F+SL
Sbjct: 727 KKFELPR-WCIYIAWSLCFCVVLTSATFTFFYSL 759


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 194 HHIILHQSTVHPY 156
           HH I+H ST HPY
Sbjct: 53  HHYIVHASTTHPY 65



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 194 HHIILHQSTVHPY 156
           HH I+H ST HPY
Sbjct: 95  HHYIVHASTTHPY 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,043
Number of Sequences: 59808
Number of extensions: 182776
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)