Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00930
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 166 3e-42
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 165 4e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 165 4e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 96 5e-21
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 91 1e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 68 1e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 9e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.009
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.065
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.15
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.26
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.34
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.46
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 5.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.4
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 25 7.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 7.4
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 25 9.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 166 bits (403), Expect = 3e-42
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +3
Query: 3 EKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 182
EKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNM
Sbjct: 43 EKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNM 102
Query: 183 ITGTSQADCAVLIVAAGTGEFEAG 254
ITGTSQADCAVLI+ GTGEFEAG
Sbjct: 103 ITGTSQADCAVLIIGGGTGEFEAG 126
Score = 134 bits (323), Expect = 1e-32
Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA 436
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 437 VAFVPISGWHGDNMLEPSTKMPWFRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPC 613
V FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 186 VPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPL 244
Query: 614 VFPCKTYTK 640
P + K
Sbjct: 245 RLPLQDVYK 253
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVP 663
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVP 261
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 165 bits (402), Expect = 4e-42
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +3
Query: 3 EKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 182
EKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNM
Sbjct: 43 EKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNM 102
Query: 183 ITGTSQADCAVLIVAAGTGEFEAG 254
ITGTSQADCA+LI+ GTGEFEAG
Sbjct: 103 ITGTSQADCAILIIGGGTGEFEAG 126
Score = 134 bits (323), Expect = 1e-32
Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA 436
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 437 VAFVPISGWHGDNMLEPSTKMPWFRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPC 613
V FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 186 VPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPL 244
Query: 614 VFPCKTYTK 640
P + K
Sbjct: 245 RLPLQDVYK 253
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVP 663
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVP 261
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 165 bits (402), Expect = 4e-42
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +3
Query: 3 EKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 182
EKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNM
Sbjct: 43 EKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNM 102
Query: 183 ITGTSQADCAVLIVAAGTGEFEAG 254
ITGTSQADCA+LI+ GTGEFEAG
Sbjct: 103 ITGTSQADCAILIIGGGTGEFEAG 126
Score = 134 bits (323), Expect = 1e-32
Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA 436
SK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP
Sbjct: 128 SKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 437 VAFVPISGWHGDNMLEPSTKMPWFRDGRWSVKKAKLTENASLKLSMPSCHLPA-PLTSPC 613
V FVP+SG+ GDNM+EP+T MPW++ G KA + + +L ++ S PA P P
Sbjct: 186 VPFVPVSGFQGDNMIEPTTNMPWYQ-GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPL 244
Query: 614 VFPCKTYTK 640
P + K
Sbjct: 245 RLPLQDVYK 253
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 QGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVP 663
QGWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 210 QGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVP 261
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 95.9 bits (228), Expect = 5e-21
Identities = 46/84 (54%), Positives = 54/84 (64%)
Frame = +3
Query: 9 EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT 188
EA GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI
Sbjct: 215 EAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIA 274
Query: 189 GTSQADCAVLIVAAGTGEFEAGSL 260
G S AD AVL+V + FE G L
Sbjct: 275 GASSADFAVLVVDSSQNNFERGFL 298
Score = 73.3 bits (172), Expect = 3e-14
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Frame = +2
Query: 254 FSKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNP 430
F +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKT 354
Query: 431 AAVAFVPISGWHGDNML--EPSTKMPWFR 511
+ V FVPIS G N++ + S W++
Sbjct: 355 SNVHFVPISAISGTNLIQKDSSDLYKWYK 383
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 547 GKCLIEALDAILPPARPTDKPLRLPLQDVYK 639
G L+ ALD ++PP +P KPLRL + DVY+
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYR 414
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.5 bits (217), Expect = 1e-19
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +3
Query: 3 EKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 182
E+EA+E GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NM
Sbjct: 274 EREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNM 333
Query: 183 ITGTSQADCAVLIVAAGTGEFEAG 254
I G SQAD VL+++A GEFEAG
Sbjct: 334 INGASQADIGVLVISARRGEFEAG 357
Score = 72.1 bits (169), Expect = 7e-14
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 FSKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYNP 430
F + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN
Sbjct: 358 FERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS 417
Query: 431 AA-VAFVPISGWHGDNMLE--PSTKMPWFR 511
V ++P+S + G N+ + S+ PW++
Sbjct: 418 KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ 447
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/75 (41%), Positives = 48/75 (64%)
Frame = +3
Query: 18 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 197
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 198 QADCAVLIVAAGTGE 242
D A+++V+A G+
Sbjct: 139 TMDGAIIVVSATDGQ 153
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 269 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 406
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 556 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTV 660
L+EA+D+ + P R TD P + ++DV+ I G GTV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTV 269
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 9e-07
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 51 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 230
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 231 GTG 239
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 54 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 221
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 222 VAAGTG 239
V A G
Sbjct: 155 VDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 24 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 197
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 198 QADCAVLIVAAGTG 239
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.065
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Frame = +3
Query: 54 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 176
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 177 NMITGTSQADCAVLIVAAGTG 239
+ D AVL++ A +G
Sbjct: 161 EVERALRVLDGAVLVLCAVSG 181
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 132 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 227
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 269 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 409
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 129 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 239
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 57 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 179
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 141 IIDAPGHRDFIKNMITGTSQADCAVLIV 224
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 224
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 129 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 224
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 72 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 224
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 118 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWAS 8
S F IS+ +P FSL+ ++ K LPI W S
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCS 439
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 360 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 449
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 439 RFRAHFWMARRQHVGAFNQNALVQGWQVER-KEGKADG 549
RF A W + VGAF N +QG + + E +ADG
Sbjct: 292 RFTAASWKYKDGGVGAFTHNITLQGAKYDTCIEVQADG 329
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 338 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 508
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 525 LHLPSLNQGILVEGSNMLSPCHPEMG 448
+H +QG+LV + P HPE+G
Sbjct: 11 IHQALFSQGVLVAKKDFNLPKHPEVG 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,331
Number of Sequences: 5004
Number of extensions: 65360
Number of successful extensions: 230
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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