Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00930
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   3e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           86   2e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              75   4e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     44   1e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.37 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.1  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              30   1.9  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.9  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   5.9  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 21  MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 200
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +1

Query: 526 RKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVP 663
           +KE  A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGGIGTVP
Sbjct: 77  KKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVP 122


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 35/84 (41%), Positives = 58/84 (69%)
 Frame = +3

Query: 3   EKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 182
           E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NM
Sbjct: 180 EREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNM 239

Query: 183 ITGTSQADCAVLIVAAGTGEFEAG 254
           I+G +QAD  VL+++A  GEFE G
Sbjct: 240 ISGATQADLGVLVISARKGEFETG 263



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/59 (52%), Positives = 45/59 (76%)
 Frame = +2

Query: 254 FSKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 430
           F + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 264 FERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +3

Query: 93  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 254
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +2

Query: 254 FSKNGQTREHALLAFTLGVKQLIVGVNKMD 343
           F   GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 55  FESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 6   KEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 185
           +EA  +     K     D ++ ER+RGI++  ++  F      + I+D PGH+DF ++  
Sbjct: 38  QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97

Query: 186 TGTSQADCAVLIVAAGTG 239
              +  D  ++++    G
Sbjct: 98  RTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 135 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 239
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 84  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 230
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 60  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 227
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
 Frame = +3

Query: 57  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITG 191
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 141 IIDAPGHRDFIKNMITGTSQADCAVLIV 224
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 51   VLDKLKAERERGITI 95
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 129 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 239
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 344  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 484
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,295,673
Number of Sequences: 59808
Number of extensions: 519429
Number of successful extensions: 1532
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)