Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00929
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    28   0.062
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    27   0.11 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    27   0.11 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.25 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.33 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.43 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.76 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.1  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.3  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   WFQNTRARERKGQFRAHAQVINKRCP 79
           WFQN RA+ERK Q +   +V  K  P
Sbjct: 203 WFQNRRAKERK-QVKKREEVTQKDSP 227


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 14  TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPDEE 193
           ++A       R H+     RCP C   F   S++ +H+ T   ++  R  +   A  D  
Sbjct: 32  SQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 91

Query: 194 LSTE 205
             T+
Sbjct: 92  TLTK 95



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 44  RAHAQVINKRCPFCPALFKVKSALESHL 127
           R H+     RC  C   F   S L  HL
Sbjct: 70  RTHSGERPYRCRLCKKAFSDSSTLTKHL 97


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 14  TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPDEE 193
           ++A       R H+     RCP C   F   S++ +H+ T   ++  R  +   A  D  
Sbjct: 288 SQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 347

Query: 194 LSTE 205
             T+
Sbjct: 348 TLTK 351



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 44  RAHAQVINKRCPFCPALFKVKSALESHL 127
           R H+     RC  C   F   S L  HL
Sbjct: 326 RTHSGERPYRCRLCKKAFSDSSTLTKHL 353


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +2

Query: 14  TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPDEE 193
           TR+ E +   R H       CP C   F     L  H+ T H     +G  + D+  D E
Sbjct: 357 TRSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKT-HNGNGKKG--SSDSCSDSE 413

Query: 194 LSTES 208
            +++S
Sbjct: 414 ENSQS 418


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 325 QYSEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIPLDLSKPVDLSRPGSD 495
           Q   E  KRY + + + +    + GS DSS +  E  +      +    +L  PGSD
Sbjct: 359 QLINEMKKRYSALINSQSCPITSSGSTDSSSQSVEDPQQVEAAIVHLIANLPSPGSD 415


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 2   WFQNTRARERK 34
           WFQN RA+ERK
Sbjct: 204 WFQNRRAKERK 214


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 71   RCPFCPALFKVKSALESHLSTKH 139
            +C FC   F  K A   HLS  H
Sbjct: 1055 KCAFCDTPFISKGAYRHHLSKMH 1077


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 347 FIDSSLYCLINFSMSE 300
           F+ S ++CL+NF+  E
Sbjct: 17  FVQSEIFCLVNFNHRE 32


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 74  CPFCPALFKVKSALESHL 127
           CP CP + + K  LE HL
Sbjct: 233 CPKCPFITEYKHHLEYHL 250


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 2   WFQNTRARERKGQFRAHAQVINKRCP 79
           WF N RAR RK    A   ++    P
Sbjct: 267 WFSNRRARLRKQITSAATPLVRSYAP 292


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 324 FDKFLHV*MKRRENRGQHGSPRLEK 250
           FDK +    +  E+   H SPR+ K
Sbjct: 157 FDKLIEEDSRSNEDTSLHPSPRITK 181


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 324 FDKFLHV*MKRRENRGQHGSPRLEK 250
           FDK +    +  E+   H SPR+ K
Sbjct: 105 FDKLIEEDSRSNEDTSLHPSPRITK 129


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 324 FDKFLHV*MKRRENRGQHGSPRLEK 250
           FDK +    +  E+   H SPR+ K
Sbjct: 288 FDKLIEEDSRSNEDTSLHPSPRITK 312


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 5   FQNTRARERKGQFRAHAQVINKRCPFCPALFKVKS 109
           F N    ERK  F + +    KR      L K KS
Sbjct: 244 FSNNVIAERKKHFSSSSYSSRKRLAMLDLLLKYKS 278


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 5   FQNTRARERKGQFRAHAQVINKRCPFCPALFKVKS 109
           F N    ERK  F + +    KR      L K KS
Sbjct: 244 FSNNVIAERKKHFSSSSYSSRKRLAMLDLLLKYKS 278


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 412 RSRCFHRSVEQRHELVIRSHNV 347
           ++R  HR +  R+ LV  +H V
Sbjct: 610 KTRVVHRDLAARNVLVCENHTV 631


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 274 LPPIFPP 294
           LPPIFPP
Sbjct: 185 LPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,963
Number of Sequences: 336
Number of extensions: 3711
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)