Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00929
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 32 0.088
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 29 0.82
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 27 1.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.9
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 3.3
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 4.4
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce... 26 5.8
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.7
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 7.7
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 7.7
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.9 bits (69), Expect = 0.088
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 14 TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRG 160
TR + FR+H CP C + F L H++ KH Q G
Sbjct: 29 TRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAG 77
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 0.82
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 507 LDTASETMEFYEEDEPSSPIMAGQPQTPRPPGKRYRTQMSSL 632
+++ E + ++ E S + QPQTPR KR R S+L
Sbjct: 248 VNSKDENFDLQDDSESSEDNLTIQPQTPRRRHKRSRHNSSNL 289
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 8 QNTRARERKGQFRAHAQVINKRCPFCPALFKVKS---ALESHLSTKHADQCTRGEINVDA 178
QN + E Q + + KRC + + L SHL + D+ T I A
Sbjct: 66 QNIKIDEEDSQAKEKLEEFKKRCSYYRGSYDKPEDFEGLNSHLCEREGDRSTHNRIFYLA 125
Query: 179 LPDEELSTEST 211
LP + + +T
Sbjct: 126 LPPDVFVSVAT 136
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 552 PSSPIMAGQPQTPRPPG 602
P +PIM G P P PPG
Sbjct: 753 PPAPIMGGPPPPPPPPG 769
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 436 FHVLGVYRRSRCFHRSVEQRHELVIRSHNVSSI 338
F ++G CFHR ++ HE ++ + + ++I
Sbjct: 943 FKIIGYLSTRICFHRGLDDSHEQLVDNDDEAAI 975
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDAL 181
CP+C K K L+ H+ H D+ E + D L
Sbjct: 61 CPYCEIKCKRKDLLKRHIQRFHNDKSVIEEGSKDVL 96
>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 402 QRLLR*TPRTWKIRDPFRSQ*ACGFITTWVRRR*ALDTASETMEFYEEDEPSSPIMAGQP 581
++LL+ TP+ I RS+ C I TWV +T + + D P S M+ +P
Sbjct: 5 EKLLKITPKILVIMGSVRSKRLCPTIATWVGEMGKRETNFDYEKVDLTDWPLS--MSDEP 62
Query: 582 QTP 590
P
Sbjct: 63 GLP 65
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 379 RHELVIRSHNVSSILHCT 326
+ E+++ SHN SSIL+ T
Sbjct: 26 KQEIIVSSHNASSILNTT 43
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 319 IKQYSEESMKRYVSELQAHAAAQQ 390
+K +EE++K++ SEL+ H +Q
Sbjct: 95 LKSVNEENLKKFFSELENHGNIRQ 118
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 319 IKQYSEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEH 432
++ S S+ Y SEL + A+ QN ND D ++
Sbjct: 144 LRAVSTVSLTPYKSELPSGASTTQNRSPNDEEDEDEDY 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,327
Number of Sequences: 5004
Number of extensions: 60660
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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