Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00929
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 31 1.1
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 30 1.5
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 1.5
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 3.4
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 28 6.0
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467 28 6.0
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529... 28 6.0
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 28 7.9
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 28 7.9
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 PEHGKSEIPLDLSKPVDLSRPGSDADER*-ILPPKQWNSMKKTNPHRLSWPVNHKHLDHP 600
PEH +S + + P S E ++PP+Q + ++ ++PH + P+ + D+
Sbjct: 544 PEHDESSETISNRSQSEKGAPSSPYYEPLQVIPPEQKSGLEPSSPHVVK-PIKNARTDYK 602
Query: 601 VNDIAL 618
V D+ L
Sbjct: 603 VYDVEL 608
>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 11 NTRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKH 139
N RE++ Q + H + RC FC F+ + L+ H +H
Sbjct: 942 NDMFREQE-QHKIHFDINEWRCGFCKKAFRAEKFLDQHFHNRH 983
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 331 SEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIP 450
++ KR +L + N G +D+SD + HG SE+P
Sbjct: 221 AQAKAKRKAQKLDIVSHPNTNEGRDDTSDDKAHHGSSELP 260
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR-CPFCPALFKVKSALESHLS-TKHADQCTRGEINVD 175
WFQN R RE++ + + Q +N++ L + L+ +S + + R +++
Sbjct: 80 WFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQQLHNP 139
Query: 176 ALPDEELSTESTPSFGSQQSDRQQN 250
++ + S ES + G Q +QQN
Sbjct: 140 SVATTDTSCESVVTSG--QHHQQQN 162
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKRC-PFCPALFKVKSALESHLS-TKHADQCTRGEINVD 175
WFQN R RE++ + + Q +N++ L + L+ +S + + R +++
Sbjct: 77 WFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMRTQLHNP 136
Query: 176 ALPDEELSTESTPSFGSQQSDRQQN 250
+ + S ES + G Q +QQN
Sbjct: 137 SAATTDTSCESVVTSG--QHHQQQN 159
>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
Length = 734
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 307 MEKFIKQYSEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIPLDL 459
+E+++ Q++ +S +Q + GG N S+ RR SE+ LDL
Sbjct: 186 LERYL-QWASKSAIEATRNIQTNDDGDGGGGENRSAARRHRSATSELQLDL 235
>01_04_0060 -
15552024-15552070,15552249-15552435,15552643-15552930,
15553027-15553221,15553330-15553431,15553588-15553842,
15553936-15553995
Length = 377
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 400 FHRSVEQRHELVIRSHNVSSILHCTV**ISPCLNEKAGK*GATW 269
+ +++ + ++I+ + LH +V +S C EK GK TW
Sbjct: 295 YFKNITHANGVIIQPSGLECSLHASVDALSSCYGEKQGKKYRTW 338
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHA 142
CP C +F +LE H ST+HA
Sbjct: 196 CPDCDEVFVKPDSLELHRSTRHA 218
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 265 APMLPPIFPPFHSDMEKFIKQYSEESMKRYVSELQAHAAAQQNGGSNDSSDRR 423
APML P + PFH + ++ Q E+ R++ + +Q +R
Sbjct: 1004 APMLFPGYAPFHGEQQERRNQPKREAYDRWIHSTRPTLPTRQRSQERGQQRKR 1056
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,782
Number of Sequences: 37544
Number of extensions: 433203
Number of successful extensions: 1294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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