Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00929
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 31 0.86
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12) 31 0.86
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8) 31 1.1
SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33) 30 1.5
SB_32569| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36) 30 1.5
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 30 1.5
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 30 2.0
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 30 2.0
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28) 29 4.6
SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_49642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_37400| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 28 6.1
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.1
SB_14835| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_14424| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_10362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_2726| Best HMM Match : zf-C2H2 (HMM E-Value=3.9) 28 6.1
SB_263| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.1
SB_58438| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 28 6.1
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_47109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_35729| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_28415| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_17719| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_2372| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.1
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.0
SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.0
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003) 28 8.0
SB_3562| Best HMM Match : Ribosomal_60s (HMM E-Value=2.1) 28 8.0
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 86 PALFKVKSALESHLSTKHADQCTRGEINVDALPDEELSTESTPSFGSQQSD 238
P L K ++LE ++ ++ + + I+ +PDEEL+ E P +QSD
Sbjct: 885 PVLSKYATSLEGNIKNRYIQKIEKIGIDPATIPDEELNPECLPPI--EQSD 933
>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
Length = 595
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 86 PALFKVKSALESHLSTKHADQCTRGEINVDALPDEELSTESTPSFGSQQSD 238
P L K ++LE ++ ++ + + I+ +PDEEL+ E P +QSD
Sbjct: 186 PVLSKYATSLEGNIKNRYIQKIEKIGIDPATIPDEELNPECLPPI--EQSD 234
>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
Length = 498
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 177 HYQTKNLVRSPRQVLVLNKVTGSKIFPSGGSHVAPYFPAFSFRHGEIYQTVQ*RIDE 347
+YQ K +++ R VL+L+ VT +I GG Y +F HGE+ + +DE
Sbjct: 239 YYQPKVIMQGGRPVLLLHPVTPDQIKKQGGQR---YKGLSAFGHGEVPIMLSLPLDE 292
>SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)
Length = 644
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 50 HAQVINKRCPFCPALFKVKSALESHLSTKHADQ 148
HA+ +CP CP FK S L HL T H D+
Sbjct: 348 HAENRPHKCPQCPKGFKQPSHLAQHLRT-HTDE 379
>SB_32569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 506 RSSASDPGRDKSTGLLRSKGISDFPCSGRLS 414
RSS DP R LL G D PCSG LS
Sbjct: 27 RSSEDDPHRSPCQELLSLNGEWDAPCSGALS 57
>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
Length = 651
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 32 KGQFRAHAQVINKRCPFCPALFKVKSALESHL 127
K R H+ V +CP+C F KS L++H+
Sbjct: 569 KYHMRTHSDVRMYKCPYCDKGFNQKSNLQAHI 600
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 239 RQQNFSKRGLPCCPL-FSRLFIQTWRNLSNSTVKNR*NVM*ANYKLMPLLNRTVEATTP 412
RQ NFS +P L SR+ +T R ++ V+NR NV+ N ++ +VE ++P
Sbjct: 106 RQINFSGSNMPTSNLRISRILSETDREIAPDAVRNRLNVL-QNNDNASAVDASVERSSP 163
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 26 ERKGQFRAHAQVINKRCPFCPALFKVKSALESHLS 130
ER R H RCP+C LF+ L+ H++
Sbjct: 477 ERAVHMRTHTGARPYRCPYCLKLFRYSGDLKQHIN 511
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 80 FCPALFKVKSALESHLSTKHADQCTRGE-INV-DALPDEELSTESTPSFGSQQSDRQQ 247
FC F + L H+ KHAD+ T G+ +NV D ++L + P + SD +Q
Sbjct: 51 FCDKKFYWQVHLRFHVERKHADKETAGKSLNVNDESDSQDLQVDDIPQL-ERNSDSEQ 107
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHAD 145
C FC LF KS LE H+S +H +
Sbjct: 404 CIFCRKLFHGKSLLERHVSKRHKE 427
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 14 TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQC 151
T R + + Q +C FC F LE H+S+ H C
Sbjct: 359 TGKRALRNHMKKVHQTTTTKCEFCKKEFTALEDLERHVSSNHDLSC 404
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 44 RAHAQVINKRCPFCPALFKVKSALESHLSTKHAD-QCTRGEINVDALPDEELSTESTPSF 220
R H +K P A + + ES LS D + + GE +V + D E E TP F
Sbjct: 2963 RIHVPEEDKESPGVDASVERPQSRESALSGYSEDFEPSEGEESVKSEQDLENRVEYTPDF 3022
Query: 221 GSQQS 235
G+ +S
Sbjct: 3023 GASES 3027
>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
Length = 693
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 8 QNTRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHA 142
+ + R+ K + + +CP C F L++HL KHA
Sbjct: 402 KEAKPRKEKVKKPKAPSTLRVKCPLCDMKFNFVRRLKTHLQVKHA 446
>SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 455
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 432 CPQCPRLFRAQIGLISHLRT 451
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 480 CPQCPRLFRAQIGLISHLRT 499
>SB_49642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 95 CPQCPRLFRAQIGLISHLRT 114
>SB_37400| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 385
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 362 CPQCPRLFRAQIGLISHLRT 381
>SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 44 RAHAQVINKR----CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPDE 190
RA A + K CP+C LF+ K L SH T H + + + ++ DE
Sbjct: 119 RAEATALQKAYTISCPYCQRLFQAKIVLSSHRRT-HRSRLPQSKDDLVVSTDE 170
>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 855
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 832 CPQCPRLFRAQIGLISHLRT 851
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTK-----HADQCTRGEINVDALPDEELSTESTPSFGSQQS 235
+CP CP F +S L H+ T DQC + + +L EL + +
Sbjct: 1114 KCPKCPMTFPRRSRLAVHVRTHSDKVFQCDQCGKSFRHSRSLARHELLHSGQRPYRCTEP 1173
Query: 236 DRQQNFSKR 262
+ +Q+F ++
Sbjct: 1174 ECEQSFGRQ 1182
>SB_14835| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 382
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 359 CPQCPRLFRAQIGLISHLRT 378
>SB_14424| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 272
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 249 CPQCPRLFRAQIGLISHLRT 268
>SB_10362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 333 CPQCPRLFRAQIGLISHLRT 352
>SB_2726| Best HMM Match : zf-C2H2 (HMM E-Value=3.9)
Length = 118
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 95 CPQCPRLFRAQIGLISHLRT 114
>SB_263| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 272
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 249 CPQCPRLFRAQIGLISHLRT 268
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 44 RAHAQVINKR---CPFCPALFKVKSALESHLSTKHADQ 148
R HA++ NK+ CP C +F K L H H+DQ
Sbjct: 343 RTHAKIHNKQRFPCPQCDKVFSSKGFLAKH-EVIHSDQ 379
>SB_58438| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 85
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 62 CPQCPRLFRAQIGLISHLRT 81
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 1069 CPQCPRLFRAQIGLISHLRT 1088
>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1395
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 1109 CPQCPRLFRAQIGLISHLRT 1128
>SB_47109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 337 CPQCPRLFRAQIGLISHLRT 356
>SB_35729| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 237
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 214 CPQCPRLFRAQIGLISHLRT 233
>SB_28415| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 356
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 333 CPQCPRLFRAQIGLISHLRT 352
>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 1443
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 1420 CPQCPRLFRAQIGLISHLRT 1439
>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 568 CPQCPRLFRAQIGLISHLRT 587
>SB_17719| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 118
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 95 CPQCPRLFRAQIGLISHLRT 114
>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 44 RAHAQVINKR---CPFCPALFKVKSALESHLSTKHADQ 148
R HA++ NK+ CP C +F K L H H+DQ
Sbjct: 275 RTHAKIHNKQRFPCPQCDKVFSSKGFLAKH-EVIHSDQ 311
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 974 CPQCPRLFRAQIGLISHLRT 993
>SB_2372| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLST 133
CP CP LF+ + L SHL T
Sbjct: 391 CPQCPRLFRAQIGLISHLRT 410
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 44 RAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRGEI 166
R+H +C +C A F V L+SHL ++ + EI
Sbjct: 668 RSHTGQRPYKCEYCSAAFSVSDTLKSHLRLHTGERPYKCEI 708
>SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTKHAD 145
+CP+C F + L +HLS +H D
Sbjct: 112 KCPYCAKAFVSQEYLLAHLSRRHDD 136
>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 330
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 38 QFRAHAQVINK--RCPFCPALFKVKSALESHLSTKHADQ 148
+F H N RC +C F + L+SH++ H +Q
Sbjct: 291 KFHMHVHTDNSPYRCKYCKVSFSRRCDLKSHIANVHENQ 329
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 544 KTNPHRLSWPVNHKHLDHPVN 606
K+ PH L W + DHPVN
Sbjct: 1483 KSCPHGLKWNIEKNACDHPVN 1503
>SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)
Length = 369
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTKHAD 145
+CP+C F + L +HLS +H D
Sbjct: 112 KCPYCAKAFVSQEYLLAHLSRRHDD 136
>SB_3562| Best HMM Match : Ribosomal_60s (HMM E-Value=2.1)
Length = 254
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 286 FPPFHSDMEKFIKQY----SEESMKRYVSELQAHAAAQQNGG 399
+ P +DM+ + Y SEE MK Y+ L+ A + GG
Sbjct: 20 YTPSKADMKAILHDYGAELSEEKMKEYMKALKTKNACRSGGG 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,500,397
Number of Sequences: 59808
Number of extensions: 463618
Number of successful extensions: 1542
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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