Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00929
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 39 0.004
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 36 0.020
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 31 0.58
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 31 0.58
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 31 0.58
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 31 0.58
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 31 0.58
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 31 0.76
AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical ... 31 1.0
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 30 1.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.3
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 28 7.1
U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 28 7.1
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 27 9.4
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 27 9.4
AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical ... 27 9.4
AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p4... 27 9.4
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = +3
Query: 603 KRYRTQMSSLQVKIMKSLFTDYKTPT 680
KR+RT ++ +QV++MKS+F +YKTP+
Sbjct: 1347 KRFRTHLTPMQVQMMKSVFNEYKTPS 1372
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 WFQNTRARERK--GQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTRGEINVD 175
WFQN RA+ERK G ++ C C F + +L+ HL + + R + +
Sbjct: 1393 WFQNARAKERKTRGAVDEDSRSGELHCEICDKTFATRLSLQDHLFAEQHIEFLRNNLKRE 1452
Query: 176 ALPDEELSTESTPSFGSQQSDRQQN 250
+ EL+T S ++ + N
Sbjct: 1453 GV--SELTTASVTECSPEKKAKLPN 1475
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 65 NKRCPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPD 187
+K C FC FK +SA+ H++ KH ++D +PD
Sbjct: 1235 HKLCIFCAQDFKDRSAMSEHMAQKHPQHMLLPNFDLDMMPD 1275
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTKHADQCTRGEINVDALPDEELSTESTPSFG 223
+CP C +K + LE H+ KH D + + P +L+ T S G
Sbjct: 103 KCPKCNWHYKYQETLEIHMKEKHNDVDVKCMFCAENRPHPKLARGETYSCG 153
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 14 TRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHAD 145
TR + R HA + +CP C F+VKS L +H+ T H+D
Sbjct: 874 TRKNDLDRHMRIHAGARDFKCPTCSMSFRVKSTLTTHMQT-HSD 916
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 267 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 302
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 271 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 306
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 267 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 302
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 271 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 306
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 271 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 306
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 50 HAQVINKRCPFCPALFKVKSALESHLSTKHAD 145
H V N C FC F KS L H+S KH++
Sbjct: 65 HLNVRNYSCTFCEEKFVQKSHLTRHVSRKHSN 96
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 267 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 302
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 74 CPFCPALFKVKSALESHLSTKHADQCTRGEINVDALP 184
CPFC + ++ L+ H+ TKHAD+ D +P
Sbjct: 271 CPFCGKSYTQQTYLQKHM-TKHADRSKASNFGNDVVP 306
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 31.1 bits (67), Expect = 0.76
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 44 RAHAQVINKRCPFCPALFKVKSALESHLSTKHAD 145
R + + ++ +CPFC F+ + +L+ H + KH +
Sbjct: 319 RPYKKKVSPQCPFCDKRFRNEFSLKKHFAKKHEE 352
>AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical
protein Y53F4B.5 protein.
Length = 144
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 20 ARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHAD 145
AR+R H + CP+C LF + ++ H +HA+
Sbjct: 49 ARDRLEHIVKHVKKYPFNCPYCRRLFASQKEVDGHQENRHAE 90
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 47 AHAQVINKRCPFCPALFKVKSALESHLSTKHADQCTR 157
AH + N +CP C L SAL +H T H D+ R
Sbjct: 182 AHLGIRNYKCPKCDKLLSSPSALYTHKKT-HGDKTFR 217
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTKH 139
RC FCP F +K+ L+ H+ H
Sbjct: 217 RCDFCPKTFALKNYLKLHVKQVH 239
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/89 (20%), Positives = 36/89 (40%)
Frame = +1
Query: 331 SEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIPLDLSKPVDLSRPGSDADER* 510
++E K+ E Q ++ + + + ++E+ + + SD D++
Sbjct: 136 AKEERKKAKKEKQRQKELEERNRKAEEAASKRRKREAEVEAERKRKRKEISVDSDDDDKP 195
Query: 511 ILPPKQWNSMKKTNPHRLSWPVNHKHLDH 597
L K+ T P S+ +N KHL H
Sbjct: 196 ALLEKRNRRDSSTQPSSSSFQINQKHLQH 224
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 65 NKRCPFCPALFKVKSALESHLSTKHADQCTRG 160
+++CPFC + K + LE H++ D + G
Sbjct: 320 SRKCPFCRHVSKSPAMLEKHIARHETDGTSGG 351
>U39653-4|AAL56624.1| 649|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform b protein.
Length = 649
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 292 PFHSDMEKFIKQYSEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIPLDLSKPV 471
P H+D+ + +SE + K VS + Q +G SN PE + +P L +
Sbjct: 482 PVHNDVGPPVV-FSETANKAVVSIEGSMKIEQCHGPSNPQQLNNPETTRKSVPSPLQR-- 538
Query: 472 DLSRPGSDADE 504
+S P S+A +
Sbjct: 539 SMSTPASEATD 549
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 248 NFSKRGLPCCPLFSRLFIQTWRNLS 322
NFS L CP F+ F Q WR S
Sbjct: 156 NFSLTILTFCPNFNTFFFQKWRRFS 180
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 71 RCPFCPALFKVKSALESHLSTKHAD 145
+CPFC F+ + +HL+ KH +
Sbjct: 230 QCPFCDKRFRNDISFNNHLTKKHPE 254
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 58 LGMSPELPFSFPGSGVLK 5
L ++PE+P+ FPG GV++
Sbjct: 126 LPVNPEVPYDFPGIGVIR 143
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 314 NLSNSTVKNR*NVM*ANYKLMPLLNRTVEATT 409
N SNSTV++ +V+ N +P+LN T++ +T
Sbjct: 232 NSSNSTVESVTSVIPINSSTVPVLNTTLQTST 263
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 58 LGMSPELPFSFPGSGVLK 5
L ++PE+P+ FPG GV++
Sbjct: 126 LPVNPEVPYDFPGIGVIR 143
>AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical
protein K02D7.2 protein.
Length = 193
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 32 KGQFRAHAQVINKRCPFCPALFKVKSALESHLSTKHADQ 148
KG R H C FC F +S L +HL T ++
Sbjct: 112 KGHLRTHTGEKPFGCEFCGRCFADRSNLRAHLQTHSGEK 150
>AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 34A8 protein.
Length = 499
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 141 ACFVLKWLSNALFTLNKAGQNGHLLFITWA 52
ACF L+ L+ LF L +AGQ +TWA
Sbjct: 291 ACFSLETLAIDLFDLWQAGQETTSTTLTWA 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,457
Number of Sequences: 27780
Number of extensions: 352793
Number of successful extensions: 1413
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -