Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00929
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ... 34 0.10
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ... 34 0.10
At3g08930.1 68416.m01040 LMBR1 integral membrane family protein ... 34 0.10
At1g52150.2 68414.m05885 homeobox-leucine zipper family protein ... 33 0.17
At1g52150.1 68414.m05884 homeobox-leucine zipper family protein ... 33 0.17
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 29 2.2
At4g31890.1 68417.m04532 armadillo/beta-catenin repeat family pr... 29 2.8
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 29 3.8
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 29 3.8
At1g03140.1 68414.m00291 splicing factor Prp18 family protein co... 28 6.6
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 27 8.7
>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 509
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -1
Query: 268 EPPLGKILLPVTLLRTKTWRGLRTKFFVW*CVYVNFASCALISMLRT*MAF*RAFHFKQS 89
+PPL L V + W L T F + C Y+ A A ML + F K
Sbjct: 356 DPPLSPFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWG 415
Query: 88 WTKWTSFIYNLGM 50
T SF++N+G+
Sbjct: 416 ATLMNSFLFNVGL 428
>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 526
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -1
Query: 268 EPPLGKILLPVTLLRTKTWRGLRTKFFVW*CVYVNFASCALISMLRT*MAF*RAFHFKQS 89
+PPL L V + W L T F + C Y+ A A ML + F K
Sbjct: 373 DPPLSPFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWG 432
Query: 88 WTKWTSFIYNLGM 50
T SF++N+G+
Sbjct: 433 ATLMNSFLFNVGL 445
>At3g08930.1 68416.m01040 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 310
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -1
Query: 268 EPPLGKILLPVTLLRTKTWRGLRTKFFVW*CVYVNFASCALISMLRT*MAF*RAFHFKQS 89
+PPL L V + W L T F + C Y+ A A ML + F K
Sbjct: 157 DPPLSPFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWG 216
Query: 88 WTKWTSFIYNLGM 50
T SF++N+G+
Sbjct: 217 ATLMNSFLFNVGL 229
>At1g52150.2 68414.m05885 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 837
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR-CPFCPALFKVKSALESHLS-TKHADQCTRGEINVD 175
WFQN R RE++ + + Q +N++ L + L+ +S H + R
Sbjct: 65 WFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVHENSYFRQHTPNP 124
Query: 176 ALPDEELSTESTPSFGSQQ---SDRQQNFSKRGL 268
+LP ++ S ES + G Q + Q++ S GL
Sbjct: 125 SLPAKDTSCESVVTSGQHQLASQNPQRDASPAGL 158
>At1g52150.1 68414.m05884 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 836
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR-CPFCPALFKVKSALESHLS-TKHADQCTRGEINVD 175
WFQN R RE++ + + Q +N++ L + L+ +S H + R
Sbjct: 65 WFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVHENSYFRQHTPNP 124
Query: 176 ALPDEELSTESTPSFGSQQ---SDRQQNFSKRGL 268
+LP ++ S ES + G Q + Q++ S GL
Sbjct: 125 SLPAKDTSCESVVTSGQHQLASQNPQRDASPAGL 158
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 44 RAHAQVINKRCPFCPALFKVKSALESHLSTKH 139
+ H V +C +C F + L+ H ST+H
Sbjct: 97 KVHVDVFEWKCGYCKKSFNDEKFLDKHFSTRH 128
>At4g31890.1 68417.m04532 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 518
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 301 SDMEKFIKQYSEESMKRYVSELQAHAAAQQNGGSNDSSD-RRPEHGKSEIPL 453
+D+E K+ + E +KR V ELQ+ AAA+++ ++D D R+ SE+ L
Sbjct: 120 ADVETMKKEEALEVLKRVVRELQSAAAARED--NDDGGDCRKKITAASEVRL 169
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR 73
WFQN R RE++ + A Q +N++
Sbjct: 73 WFQNRRCREKQRKEAARLQTVNRK 96
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR 73
WFQN R RE++ + A Q +N++
Sbjct: 69 WFQNRRCREKQRKESARLQTVNRK 92
>At1g03140.1 68414.m00291 splicing factor Prp18 family protein
contains Pfam profile: PF02840 Prp18 domain
Length = 420
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 310 EKFIKQYSEESMKRYVSELQAHAAAQQNGGSNDSSDRRPEHGKSEIPLDLSKPVDLSRPG 489
+K I++ EE + + + Q AAA +GG SS P G S S S
Sbjct: 32 QKKIQKLREEERREHELKAQRRAAAAASGGDGKSSGSAP--GSSNAATSASSKSSASDAA 89
Query: 490 SDADER 507
+ AD +
Sbjct: 90 AIADSK 95
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 2 WFQNTRARERKGQFRAHAQVINKR 73
WFQN R RE++ + + Q +N++
Sbjct: 63 WFQNRRCREKQRKEASRLQAVNRK 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,456
Number of Sequences: 28952
Number of extensions: 330967
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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