Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00928
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 126 3e-30
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 122 4e-29
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.46
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 3.2
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.6
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 5.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 7.4
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 25 7.4
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.4
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 7.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.8
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 9.8
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 126 bits (304), Expect = 3e-30
Identities = 59/91 (64%), Positives = 74/91 (81%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 429
LSVAYKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L
Sbjct: 46 LSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVL 105
Query: 430 DKHLIPKASNPESKVFYLKMKGDYYRSLQKW 522
+KHLIP A+ ESKVFY KMKGDYYR L ++
Sbjct: 106 EKHLIPAATTGESKVFYYKMKGDYYRYLAEF 136
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +3
Query: 510 LAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 665
LAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYE
Sbjct: 133 LAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYE 184
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = +2
Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
MS +E V AKLAEQAERY++M MK+V + +LS EERN
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERN 44
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 122 bits (295), Expect = 4e-29
Identities = 57/91 (62%), Positives = 74/91 (81%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 LSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLL 429
LSVAYKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L
Sbjct: 47 LSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVL 106
Query: 430 DKHLIPKASNPESKVFYLKMKGDYYRSLQKW 522
+KHLIP A++ ESKVFY KMKGDYYR L ++
Sbjct: 107 EKHLIPNAASAESKVFYYKMKGDYYRYLAEF 137
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/52 (61%), Positives = 38/52 (73%)
Frame = +3
Query: 510 LAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 665
LAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYE
Sbjct: 134 LAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYE 185
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 125 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 253
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERN
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERN 45
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 29.5 bits (63), Expect = 0.46
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Frame = +1
Query: 211 SDGNRRRT*QRGEEPLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEK 390
SD + R G + ++ + + R+ V+SS + E S + + R E
Sbjct: 236 SDSDTERQSDSGSKNVARQFSRIKRKRK----VLSSSSEDDESSSPEDLLKPIIRSTEEM 291
Query: 391 E-LREICYDVLGL--LDKHL---IPKASNPESKVFYLK---MKGDYYRSLQKWPQEKPDI 543
E L E+ +V L +D+ +P+ NP K FY K ++ Y L+ EK D
Sbjct: 292 ENLNELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDT 351
Query: 544 LL 549
L+
Sbjct: 352 LI 353
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 531 ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 650
E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1059 ERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 271 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 387
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 325 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 450
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 154 TLHQFFLVDGHRGRWKRTNSLMPELLKPAVLE 59
TL FL DG RWK + P V+E
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 259 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 393
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 33 EIKKK*CLHSKTAGFNNSGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDM 185
++K+ + S F N S+ + F +PR K N WPN+ S +
Sbjct: 50 QLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHL 100
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 399
SV+ + +R S+ S E + E SE R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 498
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 499 YYR 507
+R
Sbjct: 100 SFR 102
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 614 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 513
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 343 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 465
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 486 NERRLLQVLAEVATGETRHSVVEDSQ 563
N+RR + +++E ATGE S+V+ +
Sbjct: 584 NKRRSISLISEGATGEIMKSMVDSPE 609
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.8
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -3
Query: 651 LRNLTPDQALWGVWAAFSPC*FQKHLGMLSVNPLQQNVWFLLWPLLQGPVVISFHFEVKH 472
LRNLT D L+ + + + HL LSVN N + W P + + E
Sbjct: 169 LRNLTLDSNLFSNFISSNTVLLIPHLTQLSVNGCGLNSKDVQWITETFPSLEVLYLEANE 228
Query: 471 FTF-WITSFRN*VFVK 427
TSF+N F++
Sbjct: 229 IILSKATSFKNLQFLQ 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,653
Number of Sequences: 5004
Number of extensions: 56170
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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