Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00928
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.65 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.65 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.86 

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 616 CVGCIFALLISKASWYAFCESSTTECL 536
           C  CI   + S   W  +C S+   C+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCI 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 616 CVGCIFALLISKASWYAFCESSTTECL 536
           C  CI   + S   W  +C S+   C+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCI 509


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 322 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 501
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 502 --YRSLQKWPQE 531
             Y  + KW Q+
Sbjct: 500 FDYSEVSKWVQK 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,964
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)