Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00927
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.40 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   1.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +1

Query: 652 DDEDSFKR---QFSKYIKLGVTADA 717
           +D+D +K+   QFSK IKLG+  D+
Sbjct: 418 EDKDGYKKFYEQFSKNIKLGIHEDS 442


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 594 YFSIELFGFCIIARESFDGMRNIEATVNRPFIAP 493
           YFS++         E FD  + I A VN P ++P
Sbjct: 165 YFSVKKLPSPASDSECFDRRKFISALVNAPSVSP 198


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 454 CRLSTHHYWCSCLWSYEG 507
           C+  T HY C C + Y G
Sbjct: 76  CQDHTTHYTCHCPYGYTG 93


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 63  QVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 206
           + +FK       + +A+K +VV+DK K  + +  + + +   D  C +
Sbjct: 198 KTRFKTINNILENLWAKKLIVVKDKKKSRSDEQTIDICMRCHDQLCDM 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,890
Number of Sequences: 336
Number of extensions: 4087
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)