Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00927
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   121   1e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   121   1e-28
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   7.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  121 bits (291), Expect = 1e-28
 Identities = 51/80 (63%), Positives = 64/80 (80%)
 Frame = +3

Query: 15  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 194
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 195 TCQVAYSRIEGDHIVCAAYS 254
           TCQ+  SR+ GD+++  A+S
Sbjct: 61  TCQIVSSRVNGDYVLAHAHS 80



 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 44/94 (46%), Positives = 65/94 (69%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G+ DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QF
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQF 223

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS 783
           S  I  G+ +D +E IY +A+  IR D P+ +KS
Sbjct: 224 SGLIADGIESDQLEDIYAEAYAKIRED-PSFQKS 256



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 36/85 (42%), Positives = 47/85 (55%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELPRYG+K GL N+ AAY+TG                              E +++GP 
Sbjct: 81  SELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPR 140

Query: 434 AFRCYLDVGLARTTTGARVFGAMKG 508
            F+ +LDVGL RT+TG+RVFGAMKG
Sbjct: 141 PFKVFLDVGLKRTSTGSRVFGAMKG 165


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  121 bits (291), Expect = 1e-28
 Identities = 51/80 (63%), Positives = 64/80 (80%)
 Frame = +3

Query: 15  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 194
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 195 TCQVAYSRIEGDHIVCAAYS 254
           TCQ+  SR+ GD+++  A+S
Sbjct: 61  TCQIVSSRVNGDYVLAHAHS 80



 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 44/94 (46%), Positives = 65/94 (69%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G+ DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QF
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQF 223

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS 783
           S  I  G+ +D +E IY +A+  IR D P+ +KS
Sbjct: 224 SGLIADGIESDQLEDIYAEAYAKIRED-PSFQKS 256



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 36/85 (42%), Positives = 47/85 (55%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELPRYG+K GL N+ AAY+TG                              E +++GP 
Sbjct: 81  SELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPR 140

Query: 434 AFRCYLDVGLARTTTGARVFGAMKG 508
            F+ +LDVGL RT+TG+RVFGAMKG
Sbjct: 141 PFKVFLDVGLKRTSTGSRVFGAMKG 165


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 344 EAVFVLIADQLNMLQHNLSDQPSHHNVATH 255
           EAV + + D  + L  +LSD+ S+ ++A H
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEH 198


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 625  AEYMRSLEQDDEDSFKRQFSKYIK 696
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,814
Number of Sequences: 5004
Number of extensions: 67436
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)