Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00927
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   114   7e-26
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   113   2e-25
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    28   7.5  
03_02_0634 + 9986742-9987512                                           28   9.9  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  114 bits (275), Expect = 7e-26
 Identities = 48/97 (49%), Positives = 75/97 (77%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G++DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  F
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 220

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS*RK 792
           S+Y+K G+ AD +EA+YKK H AIRAD PT  KS +K
Sbjct: 221 SEYLKKGIDADGMEALYKKVHAAIRAD-PTMAKSTKK 256



 Score =  107 bits (256), Expect = 1e-23
 Identities = 50/79 (63%), Positives = 59/79 (74%)
 Frame = +3

Query: 18  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 197
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 198 CQVAYSRIEGDHIVCAAYS 254
            Q+ Y+ I GD ++ AAYS
Sbjct: 60  AQIVYATIAGDIVMAAAYS 78



 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 43/87 (49%), Positives = 48/87 (55%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELPRYG++VGLTNYAAAY TG                          +Y VEP D    
Sbjct: 79  HELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-RR 137

Query: 434 AFRCYLDVGLARTTTGARVFGAMKGLL 514
            FR  LDVGL RTTTG RVFGA+KG L
Sbjct: 138 PFRALLDVGLIRTTTGNRVFGALKGAL 164


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  113 bits (272), Expect = 2e-25
 Identities = 47/97 (48%), Positives = 75/97 (77%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G++DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  F
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 220

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS*RK 792
           S+Y+K G+ AD +E++YKK H AIRAD PT  KS +K
Sbjct: 221 SEYLKKGIDADGMESLYKKVHAAIRAD-PTMAKSTKK 256



 Score =  109 bits (262), Expect = 3e-24
 Identities = 51/79 (64%), Positives = 60/79 (75%)
 Frame = +3

Query: 18  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 197
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 198 CQVAYSRIEGDHIVCAAYS 254
            Q+ Y+ I GD ++ AAYS
Sbjct: 60  AQIVYATIAGDIVMAAAYS 78



 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 43/87 (49%), Positives = 48/87 (55%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELPRYG++VGLTNYAAAY TG                          +Y VEP D    
Sbjct: 79  HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-RR 137

Query: 434 AFRCYLDVGLARTTTGARVFGAMKGLL 514
            FR  LDVGL RTTTG RVFGA+KG L
Sbjct: 138 PFRALLDVGLIRTTTGNRVFGALKGAL 164


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 206 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 27
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 26  NESH 15
            + H
Sbjct: 171 GDIH 174


>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 431 GAFRCYLDVGLARTTTGARVFGAMKGLLTVASMFL 535
           G F   L  GL +   G   FG + G +TVAS+FL
Sbjct: 124 GPFLFLLSFGLFQLLAGKFHFGIVLGWVTVASLFL 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,112,765
Number of Sequences: 37544
Number of extensions: 427093
Number of successful extensions: 943
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)