Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00927
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             149   3e-36
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         103   2e-22
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.5  
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         30   2.5  
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   3.3  
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   3.3  
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   3.3  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                29   3.3  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.3  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   7.7  
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  149 bits (360), Expect = 3e-36
 Identities = 68/97 (70%), Positives = 83/97 (85%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G+VDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQF
Sbjct: 196 KGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQF 255

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS*RK 792
           S YIK GV AD+IE IYK AH+AIRAD P  +K+ +K
Sbjct: 256 SAYIKNGVDADSIEGIYKAAHQAIRAD-PVHKKAEKK 291



 Score =   99 bits (238), Expect = 2e-21
 Identities = 49/85 (57%), Positives = 54/85 (63%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELP +GVKVGLTNYAAAY TG                          EYNVE VD  PG
Sbjct: 113 HELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPG 172

Query: 434 AFRCYLDVGLARTTTGARVFGAMKG 508
           AFRC+LDVGLART+TGARVFGA+KG
Sbjct: 173 AFRCFLDVGLARTSTGARVFGALKG 197



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 78  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 203
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  103 bits (246), Expect = 2e-22
 Identities = 50/85 (58%), Positives = 55/85 (64%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELPRYGVKVGLTNYAAAY TG                          EYNVE +D  PG
Sbjct: 18  HELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPG 77

Query: 434 AFRCYLDVGLARTTTGARVFGAMKG 508
           AFRC+LDVGLART+TGARVFGA+KG
Sbjct: 78  AFRCFLDVGLARTSTGARVFGALKG 102



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +3

Query: 204 VAYSRIEGDHIVCAAYS 254
           +AY+++EGD I+CAAY+
Sbjct: 1   IAYAKLEGDVIICAAYA 17


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 562 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 696
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 690 VLAELSLERILIILFKTSHVFSNMQTKDVSPVYFSIEL--FGFCIIARESFDGMRNIEAT 517
           VLAE+ +E+     F        +  +    V +++E   FGF +   E  D MR + +T
Sbjct: 329 VLAEVPIEKRAAPTFDLD--LDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLST 386

Query: 516 VNRPFIAPKTRAPVVVRAK 460
           ++  F      APV++R K
Sbjct: 387 ISSVFDPLNFAAPVIMRGK 405


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582 ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
           + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = +3

Query: 153  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSMSCHVMV*RLV*QIMLQHIQLVCY*H 332
            P+Y+ I++ SN   +   A +      +    Y+MSC +   R++ Q+ L  I  +   H
Sbjct: 839  PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895

Query: 333  EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 422
            +  F     T  TL    S  +  +L LST
Sbjct: 896  QPLF-----TIITLVLPSSTFITLVLPLST 920


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582 ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
           + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582 ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
           + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582 ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
           + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582 ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
           + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582  ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
            + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 881  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582  ELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAK 460
            + FGF +   E  D MR + +T++  F      APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 165 LIVRLSNKDVTCQVAYSRIEGD-HIVC 242
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 TCQVAYSRIEGDHIVCAAYSMSCHVM 272
           TC V YS   GD +VCAAY +  +++
Sbjct: 617 TCHVGYS---GDGVVCAAYLLGINIL 639


>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -3

Query: 777 SSCGMIRTDGFMGFLVDGFNSICSDS*FYVLAELSLERILIILFKTSHVFSNMQTKDVSP 598
           SSC       F+ FL     +I S S F+++ E   ERIL  L   + V  N+   + + 
Sbjct: 378 SSCIFPCASIFLRFLCP---AIMSPSLFHLVQEYPNERILRTLTLIAKVIQNLA--NFTK 432

Query: 597 VYFSIELFGFCI-IARESFDGMRNIEATVNRPFIAPKTR 484
                +  GF     +  FD MR   AT++ P +  + R
Sbjct: 433 FGGKEDYMGFMNDFVQNEFDKMREFVATISSPSVGRENR 471


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 454 CRLSTHHYWCSCLWSYEGSVDGGLNVPHSIK 546
           C +    Y+C+C+WS    V G L    S K
Sbjct: 62  CSVHLDFYYCTCVWSSMAGVPGSLMADPSSK 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,872,743
Number of Sequences: 59808
Number of extensions: 526339
Number of successful extensions: 1538
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)