Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00927
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   110   9e-25
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   109   2e-24
At1g69700.1 68414.m08021 ABA-responsive protein (HVA22c) identic...    29   3.6  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   6.3  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   6.3  
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    28   6.3  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  110 bits (265), Expect = 9e-25
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = +3

Query: 15  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 194
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 195 TCQVAYSRIEGDHIVCAAYS 254
             Q+  + I GD +  +AY+
Sbjct: 61  VAQIVSASIAGDIVKASAYA 80



 Score =  107 bits (256), Expect = 1e-23
 Identities = 47/94 (50%), Positives = 70/94 (74%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G++DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  F
Sbjct: 163 KGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHF 222

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS 783
           S YIK GV A++IE +YKK H AIRAD P  +K+
Sbjct: 223 SAYIKKGVEAESIEELYKKVHAAIRAD-PNPKKT 255



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 41/87 (47%), Positives = 49/87 (56%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELP+YG+ VGLTNYAAAY TG                          +++VEP D+   
Sbjct: 81  HELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR- 139

Query: 434 AFRCYLDVGLARTTTGARVFGAMKGLL 514
            FR  LDVGL RTTTG RVFGA+KG L
Sbjct: 140 PFRALLDVGLIRTTTGNRVFGALKGAL 166


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  109 bits (263), Expect = 2e-24
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = +3

Query: 15  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 194
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 195 TCQVAYSRIEGDHIVCAAYS 254
             Q+  + I GD +  +AY+
Sbjct: 61  VAQIVSASIAGDIVKASAYA 80



 Score =  105 bits (253), Expect = 3e-23
 Identities = 46/94 (48%), Positives = 70/94 (74%)
 Frame = +1

Query: 502 EGSVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 681
           +G++DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  F
Sbjct: 163 KGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHF 222

Query: 682 SKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS 783
           S YIK GV A++IE +YKK H AIRA+ P  +K+
Sbjct: 223 SAYIKKGVEAESIEEMYKKVHAAIRAE-PNHKKT 255



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 41/87 (47%), Positives = 49/87 (56%)
 Frame = +2

Query: 254 NELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPG 433
           +ELP+YG+ VGLTNYAAAY TG                          +++VEP D+   
Sbjct: 81  HELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR- 139

Query: 434 AFRCYLDVGLARTTTGARVFGAMKGLL 514
            FR  LDVGL RTTTG RVFGA+KG L
Sbjct: 140 PFRALLDVGLIRTTTGNRVFGALKGAL 166


>At1g69700.1 68414.m08021 ABA-responsive protein (HVA22c) identical
           to AtHVA22c [Arabidopsis thaliana] GI:4884936
          Length = 184

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 600 PVYFSIELFGFCIIARESFDGMRNIEATVNRPFIAPKTRAPVVVRAKPTSK 448
           P++  ++LFG C +    F+G  +I     RPF     RA   +   P  K
Sbjct: 75  PIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKK 125


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 33  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 206
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 33  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 206
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 637 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADHPTRRKS*RK 792
           R+LE+   D+   Q SK  K+ V+  A   +  ++ E     HPTRR++ RK
Sbjct: 497 RNLERAPLDTLVPQSSKRKKM-VSQVAARQLANESEEETPKSHPTRRRTVRK 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,101
Number of Sequences: 28952
Number of extensions: 348309
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)