Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00926
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 75 3e-14
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 71 5e-13
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 68 6e-12
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 6e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 54 6e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 3e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 6e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 48 6e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.008
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 36 0.032
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.032
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.073
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.073
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.073
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.13
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.17
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.17
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.22
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.22
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.29
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.51
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.51
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 31 0.51
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.51
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.51
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.68
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.68
At3g31950.1 68416.m04046 hypothetical protein 31 0.68
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.90
At5g47430.1 68418.m05844 expressed protein 30 1.2
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.2
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.2
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.2
At4g17410.1 68417.m02607 expressed protein 30 1.2
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.2
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.2
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.2
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.6
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.6
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.1
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.1
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.1
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.1
At5g61670.2 68418.m07738 expressed protein 29 2.7
At5g61670.1 68418.m07737 expressed protein 29 2.7
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.7
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.7
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.6
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.6
At4g06479.1 68417.m00885 hypothetical protein 29 3.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.6
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.6
At2g31850.1 68415.m03889 expressed protein 29 3.6
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.8
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.8
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.8
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 4.8
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 6.3
At4g06526.1 68417.m00938 hypothetical protein 28 6.3
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.3
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.4
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 8.4
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 8.4
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = +3
Query: 261 GHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIA 398
GHFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 399 RNCPEGGRESA--TQTCYNCNKSGHISRNC 482
R+C + G CY C K GH +R C
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 61.7 bits (143), Expect = 4e-10
Identities = 43/128 (33%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Frame = +3
Query: 192 GGRGVAGFRFQSAT*EVLQVQRTGHFARDC------------KEEADRCYRCNGTGHIAR 335
GG G G R TGHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 336 ECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 458
+C Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 459 SGHISRNC 482
GHI+R+C
Sbjct: 238 VGHIARDC 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +3
Query: 300 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 437
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 438 ---TCYNCNKSGHISRNC 482
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 252
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = +3
Query: 258 TGHFARDCKEEA-------DRCYRCNGTGHIARECA 344
+GH ARDC + + CY+C GH AREC+
Sbjct: 261 SGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNAQ 261
CY+C +GH AR+C Q R SG C+KC +
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.1 bits (77), Expect = 0.042
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECT 189
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNAQDTL-RGIARKR 291
CY C GHFAR+CTQ C+ C + R A KR
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 139 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 252
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 252
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 441 CYNCNKSGHISRNCPDG 491
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 136 SSVCYKCNRTGHFAREC 186
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/77 (44%), Positives = 42/77 (54%)
Frame = +3
Query: 252 QRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESA 431
+R GHFARDC C C GHIA EC E C+NC + GH+A NC G
Sbjct: 61 KRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG---- 112
Query: 432 TQTCYNCNKSGHISRNC 482
C++C KSGH +R+C
Sbjct: 113 --ICHSCGKSGHRARDC 127
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Frame = +3
Query: 255 RTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 416
++GH ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 119 KSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN- 174
Query: 417 GRESATQTCYNCNKSGHISRNCPDG 491
C C+ SGH++R+CP G
Sbjct: 175 -----DPVCNICSISGHVARHCPKG 194
Score = 60.9 bits (141), Expect = 7e-10
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +3
Query: 261 GHFARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRES 428
GH A +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 102 GHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------T 154
Query: 429 ATQTCYNCNKSGHISRNC 482
+ C NC SGHI+R+C
Sbjct: 155 NDKACKNCRTSGHIARDC 172
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 288 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 467
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 468 ISRNC 482
++ NC
Sbjct: 104 VASNC 108
Score = 50.0 bits (114), Expect = 1e-06
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 28/105 (26%)
Frame = +3
Query: 255 RTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-------- 410
+ GH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP
Sbjct: 145 KQGHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSD 200
Query: 411 ------EGGRE--------------SATQTCYNCNKSGHISRNCP 485
+GG + SA C+NC GH + CP
Sbjct: 201 RGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 139 SVCYKCNRTGHFARECTQGGV 201
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 249
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Frame = +3
Query: 261 GHFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIA 398
GHFARDC++ CY C G GHIA+ C +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 399 RNCPEGGRESA-----TQTCYNCNKSGHISRNC 482
R+C G S+ + C+ C K GH +R C
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = +3
Query: 294 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 443
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 444 YNCNKSGHISRNC 482
Y C +GH++R+C
Sbjct: 255 YECGGTGHLARDC 267
Score = 54.8 bits (126), Expect = 5e-08
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 29/127 (22%)
Frame = +3
Query: 189 AGGR--GVAGFRFQSAT*EVLQVQRTGHFARDCKEEAD-----------RCYRCNGTGHI 329
+GG+ G G R E GHFARDC++ CY C GH+
Sbjct: 113 SGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 172
Query: 330 AREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGRES---ATQTCYNCNKS 461
A++C + CY C GH AR+C + G + TCY C
Sbjct: 173 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGV 232
Query: 462 GHISRNC 482
GHI++ C
Sbjct: 233 GHIAKVC 239
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 25/111 (22%)
Frame = +3
Query: 237 EVLQVQRTGHFARDCKEEADR-----CYRCNGTGHIAREC--------------AQSPDE 359
+ ++V G + + KE + R C+ C GH+A++C +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 360 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 494
CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNAQ 261
CY+C TGH AR+C + G S SG KCF C +
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 252
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 136 SSVCYKCNRTGHFARECT 189
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Frame = +3
Query: 258 TGHFARDCKEE----------ADRCYRCNGTGHIAREC 341
TGH ARDC +++C+ C GH AREC
Sbjct: 260 TGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSG 219
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 139 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 252
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 252
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Frame = +3
Query: 264 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 416
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 417 GRESATQ--TCYNCNKSGHISRNCPDGTKTCY 506
+ T+ +C+ C GHIS+NCP+ Y
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIY 175
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Frame = +3
Query: 243 LQVQRTGHFARDCKE------EADRCYRCNGTGHIARECAQSPDE-----PSCYNCNKTG 389
LQ +R GH ++C E E CY C TGH C ++ SC+ C G
Sbjct: 102 LQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQG 161
Query: 390 HIARNCPEG--GRESATQTCYNCNKSGHISRNCPD 488
HI++NCPE G C C H+ ++CPD
Sbjct: 162 HISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPD 196
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 312 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 488
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 116
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 416
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 417 ----GRESATQTCYNCNKSGHISRNCPDGTK 497
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 288 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 428
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 261 GHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 428
GH + +C R C+ C H A++C++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 429 ATQTCYNCNKSGH 467
C C GH
Sbjct: 232 KGAVCLRCGDFGH 244
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 300 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 476
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 477 NCPDGTK 497
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +3
Query: 252 QRTGHFARDCKEEADR------CYRCNGTGHIAREC-----AQSPDEPSCYNCNKTGHIA 398
++TGH A+DC ++ C RC GH C + + CY C GH+
Sbjct: 214 KKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLC 273
Query: 399 RNCPEGGRE-SATQTCYNCNKSGHISRNC 482
C E G S +CY C + GH C
Sbjct: 274 --CVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 136 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 255
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 11/41 (26%)
Frame = +3
Query: 261 GHFARDC-----------KEEADRCYRCNGTGHIARECAQS 350
GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNAQDT 267
S ++CY+CN +GHFAREC VS RD + K K N +++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 438 TCYNCNKSGHISRNCPDGTK 497
+CY+C + GH S NCP TK
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK 186
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 482 SRRHQDVLRCGKPGHISREC 541
SR + RCG+ GH +REC
Sbjct: 321 SREASECYRCGEEGHFAREC 340
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 36/118 (30%)
Frame = +3
Query: 255 RTGHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS-------- 365
+ GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 244 KEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSS 303
Query: 366 --CYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 500
CY C K GH +R+C + G+ +T + CY C K+GH SR+C +T
Sbjct: 304 GECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +3
Query: 300 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 422
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 423 -ESATQTCYNCNKSGHISRNC 482
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 100 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 237
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 127 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKC 252
A + + CYKC + GH+AR+CT V D+G + CFKC
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKC 273
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 100 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNAQ 261
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKC 252
SS CYKC + GH++R+CT Q SG + C+KC
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKC 345
Score = 34.3 bits (75), Expect = 0.073
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 225 SAT*EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 404
S++ E + + GH++RDC ++ +G A+ + + D CY C K GH +R+
Sbjct: 301 SSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRD 354
Query: 405 CPEGGRESAT 434
C + + T
Sbjct: 355 CTSPAQTTNT 364
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 497 DVLRCGKPGHISREC 541
D +CGKPGH SR+C
Sbjct: 269 DCFKCGKPGHWSRDC 283
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 297 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 461
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 462 GHISRNCPDGTKTCY 506
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 446
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 447 NCNKSGHISRNC 482
C + GH C
Sbjct: 81 RCGQLGHTGLAC 92
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 446
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 447 NCN----------KSGHISRNCPDGTKTCY 506
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Frame = +3
Query: 195 GRGVAGFRFQSAT*EVLQVQRTGHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 365
G + RFQ T E + GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 366 -----CYNCNKTGHIARNCPEGGR 422
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 321 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 482
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 483 PDGTK 497
P+ ++
Sbjct: 211 PNSSQ 215
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 70 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 204
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 291 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 449
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 351 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQG 195
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 506
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 83
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 506 RCGKPGHISRECDEAP 553
RCG+ GHI R C +P
Sbjct: 84 RCGERGHIERNCKNSP 99
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 291 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 449
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 351 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQG 195
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 506
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 94
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 506 RCGKPGHISRECDEAP 553
RCG+ GHI R C +P
Sbjct: 95 RCGERGHIERNCKNSP 110
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 291 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 449
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 351 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQG 195
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 506
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 124
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 506 RCGKPGHISRECDEAP 553
RCG+ GHI R C +P
Sbjct: 125 RCGERGHIERNCKNSP 140
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/83 (31%), Positives = 34/83 (40%)
Frame = +3
Query: 159 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARE 338
P A AR + GR G R + +R + RC+ C GH AR+
Sbjct: 54 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARD 113
Query: 339 CAQSPDEPSCYNCNKTGHIARNC 407
C + CY C + GHI RNC
Sbjct: 114 CTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 351 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 482
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 353
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 136 SSVCYKCNRTGHFARECTQG 195
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 506
T +R P G R++ ++ C+NC GH +R+C D CY
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCY 124
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 506 RCGKPGHISRECDEAPN 556
RCG+ GHI R C +P+
Sbjct: 125 RCGERGHIERNCKNSPS 141
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/83 (31%), Positives = 34/83 (40%)
Frame = +3
Query: 159 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARE 338
P A AR + GR G R + +R + RC+ C GH AR+
Sbjct: 13 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARD 72
Query: 339 CAQSPDEPSCYNCNKTGHIARNC 407
C + CY C + GHI RNC
Sbjct: 73 CTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 351 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 482
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 353
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 136 SSVCYKCNRTGHFARECTQG 195
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 506
T +R P G R++ ++ C+NC GH +R+C D CY
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCY 83
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 506 RCGKPGHISRECDEAPN 556
RCG+ GHI R C +P+
Sbjct: 84 RCGERGHIERNCKNSPS 100
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 480 CPDG 491
C G
Sbjct: 195 CTSG 198
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +3
Query: 192 GGRGVAGFRFQSAT*EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 365
GGRG G + GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 366 CYNCNKTGHIARNCPEGG 419
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 506 RCGKPGHISRECDE 547
+CG+PGH++REC +
Sbjct: 140 KCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 387 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 491
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 488
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 300 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 461
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 462 GH 467
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.39
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 145 CYKCNRTGHFAREC 186
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 270 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 446
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 447 NCNKSGHISRNCP 485
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 33.9 bits (74), Expect = 0.096
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Frame = +3
Query: 264 HFARDCKEEADRCYRCNGTG---HIARECAQSPD---------EPSCYNCNKTGHIARNC 407
H+ + ADR +RC G G H R C +S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Query: 408 --PEG------GRESA-------TQTCYNCNKSGHISRNCP 485
P G G S T C C K GH R CP
Sbjct: 337 RKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 130 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 234
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEG 416
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 288 EADRCYRCNGTGHIAREC 341
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 414 GGRESATQT--CYNCNKSGHISRNCPDG 491
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 130 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 234
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEG 416
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 288 EADRCYRCNGTGHIAREC 341
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 414 GGRESATQT--CYNCNKSGHISRNCPDG 491
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 234
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.51
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 414 GGRESATQTCYNCNKSGHISRNC 482
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 297 RCYRCNGTGHIAREC 341
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPEGG 419
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 458
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 459 SGHISRNCPDG 491
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 363 SCYNCNKTGHIARNCPEGGR 422
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 139 SVCYKCNRTGHFARECTQGG 198
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 414 GGRESATQTCYNCNKSGHISRNCPDG 491
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 485 RRHQDVLRCGKPGHISRECDE 547
R D +CG+PGH++R+C E
Sbjct: 126 RGGSDCYKCGEPGHMARDCSE 146
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +3
Query: 249 VQRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 419
+ +G A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 420 RESATQTCYNCNKSGHISRNCPD 488
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 384 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 500
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 145 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 234
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 417 GRESATQTCYNCNKSGHISRNC 482
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 297 RCYRCNGTGHIAREC 341
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 485
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSG 219
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 473 PQLSRRHQDVLRCGKPGHISREC 541
P R D +CGKPGH +REC
Sbjct: 111 PSGGRGGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 497
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.073
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 237 EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 359
+V Q+++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.51
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 357 EPSCYNCNKTGHIARNCPEGG 419
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.073
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 237 EVLQVQRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 359
+V Q+++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.51
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.68
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 357 EPSCYNCNKTGHIARNCPEGG 419
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 366 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 491
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 300 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 434
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 372 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 353 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 496
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 297 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 419
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGG 198
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.29
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 357 EPSCYNCNKTGHIARNCPEGG 419
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 414 GGRESATQTCYNCNKSGHISRNCP 485
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 294 DRCYRCNGTGHIAREC 341
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 420 RESATQTCYNCNKSGHISRNCPD 488
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 363 SCYNCNKTGHIARNCPE 413
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.51
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 408 PEGGRESATQTCYNCNKSGHISRNC 482
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.90
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 142 VCYKCNRTGHFAREC 186
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 366 CYNCNKTGHIARNC 407
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 300 CYRCNGTGHIAREC 341
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 461
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 419
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 363 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 482
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 438 TCYNCNKSGHISRNCPDGT---KTCYV 509
TCY+C + HI+ +CP T K+C++
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFI 170
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 423 ESATQTCYNCNKSGHISRNCP 485
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVS 207
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 357 EPSCYNCNKTGHIARNCPEGGRESATQ 437
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 438 TCYNCNKSGHISRNCPDGTKTCYV 509
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 353 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 496
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 353 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 496
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.68
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 306 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 473
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 474 RNCP 485
CP
Sbjct: 327 MYCP 330
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.90
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 273 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 449
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 450 CNKS 461
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 306 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 419
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 142 VCYKCNRTGHFARECTQGG 198
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 432 TQTCYNCNKSGHISRNCPD 488
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPEGG 419
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 115 SKPIAMSSSVCYKCNRTGHFAREC 186
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 294 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 467
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 468 ISRNC 482
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 142 VCYKCNRTGHFARECTQGG 198
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 422
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 422
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 497
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 432 TQTCYNCNKSGHISRNCPD-GTKTC 503
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSP 353
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQG 195
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 387 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 485
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 485
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 485
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 461
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 462 GHIS 473
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 327 IARECAQSP-DEPSCYNCNKTGHIARNCP 410
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 145 CYKCNRTGHFAREC 186
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 437
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 438 TCYNCNKSGHISRNCP 485
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 437
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 438 TCYNCNKSGHISRNCP 485
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 455
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 456 KSGHISRNCP 485
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 441 CYNCNKSGHISRNCPDGTKT 500
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 366 CYNCNKTGHIARNCP 410
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 130 MSSSVCYKCNRTGHFAREC 186
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 461
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 462 GHISRNCP 485
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 282 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 461
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 462 GHISRNCP 485
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 407
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 435 QTCYNCNKSGHISRNCPD 488
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 435 QTCYNCNKSGHISRNCP 485
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 435 QTCYNCNKSGHISRNCP 485
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 477 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 391
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 489 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 346
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 372 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 372 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 372 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 479
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 103 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 213
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 285 EEADRCYRCNGTGHIARECAQS 350
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 354 DEPSCYNCNKTGHIARNCPE 413
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 441 CYNCNKSGHISRNCP 485
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 216
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 410
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 294 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 464
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 465 HISRNC 482
IS C
Sbjct: 275 EISTPC 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 309 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 410
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 327 IARECAQSPDEPS-CYNCNKTGHIARNC 407
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 279 CKEEADRCYRCNGTGHIARECA 344
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,925
Number of Sequences: 28952
Number of extensions: 270691
Number of successful extensions: 1438
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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