Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00925
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.086
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.35
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 29 0.61
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.80
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 29 1.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 1.1
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 1.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 27 2.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 3.2
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 3.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.2
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.6
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.6
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 5.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 7.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.5
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 7.5
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 9.9
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.9
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 9.9
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 9.9
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 9.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.9
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.9
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.086
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 246
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 97 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 249
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 79 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEH 258
DK++ A ++ S E + K A K+E G +N ++ + E D E +
Sbjct: 1282 DKQDTASKDKNSLETIDE--KMEDASKIEGDAKTGDDNEMEDLDKMEDLEKPDYAEEKDP 1339
Query: 259 LRTVMPQKRKRL 294
TVM + R R+
Sbjct: 1340 YITVMSELRSRI 1351
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 55 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 234
++ D + K + + +S EP + VKK KK + E + E+ ++ + +S + +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQ--KKSKKKEESSSESESESSSSESESSSS 101
Query: 235 DAEESN 252
++E S+
Sbjct: 102 ESESSS 107
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 64 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 243
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 244 E 246
E
Sbjct: 236 E 236
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 79 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNE 255
+KKE + + + + ES + S ++ E E K T+E E S + D+E S++
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSD 213
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 73 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 252
++D+ +P ++S K SP K+ +K ++A + TDE P D N +
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 253 EHLRT 267
LRT
Sbjct: 646 SSLRT 650
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.80
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 88 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 246
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +1
Query: 106 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEHLRTVM 273
+ ++ K SPV + A +N + + +SP + EE+N+ +R ++
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAIL 582
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 130 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNE 255
+P+K+ PAK ++ + A SPA NG NE
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNE 154
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 100 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNE 255
+E + KES K++PA+K + + ENGT+E + + E+ E
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKKPAKRTRKRKEDGEE 102
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 124 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEHL 261
+E +S + EA E NG + S EN D+EE N+ L
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL 3984
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 777 TILSSTVDKRFVPTSSEKDNDT*NSIQHSIL 685
T L S V + VPTSS K+ T +S+QH+I+
Sbjct: 446 TKLVSCVGTKSVPTSSIKEYLTKSSLQHTIV 476
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 100 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG----DAEESNEHLRT 267
E+ + EP E+P S KVE A + AP + A + ++ E L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 268 VMPQKRKRLV 297
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 163 EAAESNGKENGTDEAPEDSPAENGDAEESNE 255
E++E + ++N TDEA ED+ + D E
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGE 385
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 112 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESN 252
S P++SPV+ V+ +ESN K +GT+ + +P NG+ E +N
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVNN 225
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 103 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNE 255
EV++ EP+ PVK+ V ++ G+ + TD +P E + S E
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTE 435
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 91 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 252
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 70 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 237
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 238 AEESN 252
E+ +
Sbjct: 135 EEDGS 139
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +1
Query: 79 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEH 258
D+ A +E + E E + + E E ++ T+E P+++P E + S
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 259 LRTVMP 276
V+P
Sbjct: 106 FYDVVP 111
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/51 (17%), Positives = 28/51 (54%)
Frame = +1
Query: 100 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 252
E +S+E +S S ++ +++ + + + ++ +DS +++ D+E +
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESES 294
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 85 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 231
++V ++TS EPK + KSP +K + ++ T++ DS +N
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDN 1020
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 620 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 730
LQ + L M L + C+ + + + CC+ F VSLSF+
Sbjct: 74 LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 106 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEHL 261
+T T+P ++ ++S E A TD +SP A E +EH+
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDEHI 423
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/50 (20%), Positives = 24/50 (48%)
Frame = +1
Query: 106 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNE 255
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDED 218
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 55 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 234
A A A + + +V+ + + +PK++PV S A + A N + T E + S +
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKE--KKSSGKQK 264
Query: 235 DAEESNEHLRT 267
A + + L T
Sbjct: 265 IASKKKDQLTT 275
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 100 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE----NGDAEESNEHLRT 267
EEV +K+ A + KEN D+ P + AE NG EE +
Sbjct: 501 EEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQVSEV 560
Query: 268 VMPQK 282
+ P+K
Sbjct: 561 LEPEK 565
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/60 (20%), Positives = 29/60 (48%)
Frame = +1
Query: 109 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNEHLRTVMPQKRK 288
++ EP+ + + + ++ E E +EN D+ ++ +N E L + + ++RK
Sbjct: 297 STAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFISELESSIQKRRK 356
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 118 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 231
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 67 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 225
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,074
Number of Sequences: 5004
Number of extensions: 55966
Number of successful extensions: 223
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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