Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00924
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    52   1e-05
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.012
UniRef50_UPI00005F1DF5 Cluster: hypothetical protein EcolE_01003...    36   0.78 
UniRef50_A4L1Z9 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_O15021 Cluster: Microtubule-associated serine/threonine...    33   5.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 27/46 (58%), Positives = 28/46 (60%)
 Frame = -2

Query: 416 PLSFSPDLLSGSRFRSGGRFCEALLLLGPVLATPPGLSPESSPTRP 279
           P+ F       SRFRS GRFCEALLLLG VLA    LSP   P RP
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELPNRP 119


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.3 bits (95), Expect = 0.012
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 428 HRHIPLSFSPDLLSGSRFRSGGRF 357
           HR  PLSFSPDLLSGSRFR+G  +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI00005F1DF5 Cluster: hypothetical protein
           EcolE_01003864; n=2; Escherichia coli E24377A|Rep:
           hypothetical protein EcolE_01003864 - Escherichia coli
           E24377A
          Length = 114

 Score = 36.3 bits (80), Expect = 0.78
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 208 FIRAFAFQCLLTLRIVKKNMSIATLSQWVTYYSRFIRFV 92
           F+  F F+CLL   ++K  +++ T+  W  +YS FI FV
Sbjct: 13  FLVPFIFRCLLRFFLLKSVIALTTVGVWYGFYSVFISFV 51


>UniRef50_A4L1Z9 Cluster: Putative uncharacterized protein; n=1;
           Gryllus bimaculatus nudivirus|Rep: Putative
           uncharacterized protein - Gryllus bimaculatus nudivirus
          Length = 410

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 269 TSQGDSLGGKKIIDSSKIEQFHSCLRFP-MFANTTDSEKKHVNRNLISVGYVLFSFH 102
           TS+ D     +IID   +   H  +  P +F N  + +K H+ +N +++ + +  +H
Sbjct: 39  TSKLDDSPNLQIIDIENVPSDHVIIPIPEIFVNVVNQKKHHIKQNFVAIPFEVLKYH 95


>UniRef50_O15021 Cluster: Microtubule-associated
            serine/threonine-protein kinase 4; n=70; Eukaryota|Rep:
            Microtubule-associated serine/threonine-protein kinase 4
            - Homo sapiens (Human)
          Length = 2444

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 392  LSGSRFRSGGRFCEALLLLGPVLATPPGLSPESSPTRPVTLTSQ--GDSLGGKKI 234
            L G R+RSG R     + L P+  TP   SP   PT P    S   G SLG  KI
Sbjct: 1179 LGGQRYRSGRRKSAGNIPLSPLARTP---SPTPQPTSPQRSPSPLLGHSLGNSKI 1230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,737,897
Number of Sequences: 1657284
Number of extensions: 11975113
Number of successful extensions: 28324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28312
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)