Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00924
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   4.9  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   6.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.5  

>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 311 GLSP--ESSPTRPVTLTSQGDSLGGKKIIDSSKIEQFHSCLRFPMFANTTDSEKKHV 147
           G SP  ES+   P +  S   SLG  +  DSS + Q  S LR P  ANT  S + ++
Sbjct: 294 GSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQ-SSLLRRP--ANTYFSAQSYL 347


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 266 SQGDSLGGKKIIDSSKIEQFHSCLRFPMFANTTDSEKKHVNRNLISVGYVLFS 108
           SQ ++   KK+ +S   + FHS   F   ++ T++E+    R   + GY LFS
Sbjct: 385 SQKNTTQSKKL-NSYIRDSFHSVNDFWFSSHATNTEQCFTKRLTATFGYSLFS 436


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 221  KIEQFHSCLRFPMFANTTDSE 159
            KIE+ H C   P+FA T D +
Sbjct: 2280 KIERKHGCAPLPIFALTADMQ 2300


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 290 PTRPVTLT-SQGDSL-GGKKIIDSSKIEQFHSCLRFP 186
           P RP +   +QGD+   GK++  S  ++ +H C + P
Sbjct: 468 PNRPTSSEPNQGDTRKAGKRLKYSRNLDDYHICTQIP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,367
Number of Sequences: 5004
Number of extensions: 51809
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)