Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00924
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    30   2.2  
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    28   6.7  
02_05_0793 - 31782203-31782355,31782958-31783096,31783407-317837...    28   6.7  

>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 332 PVLATPPGLSPESSP-TRPVTLTSQGDSLGGKKIIDSSKIEQF 207
           PVL TP G   ES+   R V       SL G  +ID S IEQ+
Sbjct: 79  PVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQW 121


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 427 WVNLLVESFVVSDGFGEDCDRCLRYLKDR*WIRTVD 534
           W+N +  + ++++   E  +  L+YLKD  W R  D
Sbjct: 214 WLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDD 249


>02_05_0793 -
           31782203-31782355,31782958-31783096,31783407-31783710,
           31783820-31783983,31784105-31784327,31784697-31784937,
           31786053-31786182,31786272-31786900
          Length = 660

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 88  FVDKVLWKQTRNVDDSDTWKRSRRVDVFS 2
           F D + W+     D++  WK++ ++D +S
Sbjct: 378 FADSLCWEMLSQQDETIVWKKTNKLDCYS 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,678
Number of Sequences: 37544
Number of extensions: 327585
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)