Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00924
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  29   3.9  
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              28   9.1  

>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 332 PVLATPPGLSPESSPTRPVTLTSQGDSLGGKKI 234
           PVL     ++P ++PTRPVTLT      G + I
Sbjct: 516 PVLIVTKPMTPTTTPTRPVTLTGSTTPTGNRLI 548


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 335  GPVLATPPGLSPESSPTRPVTLTSQGDSLGGKK 237
            G  + +PPGLS +S P + +T   +G  LG KK
Sbjct: 1088 GLSVTSPPGLSRDSVPPKSLTPDPEGKPLGLKK 1120


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -2

Query: 371 SGGRFCEALLLLGPVLATPPGLSPESSPTRPVTLTSQGDSLGGKKIIDSSKI 216
           SGGR  E+LL  G V  TP    P  +P R  TL+     +  K II    +
Sbjct: 155 SGGR--ESLLDYGFVDGTPDSTHPSLAPNRSSTLSETSMDVDRKSIISRDSV 204


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 368 GGRFCEALLLLGPVLATPPGLSPESSPTRPVTLTSQ 261
           G + C A+L  G VL +PPG  PE   ++   L +Q
Sbjct: 156 GSQKCWAVLSSGVVLPSPPGYGPELKYSKHSWLLAQ 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,784
Number of Sequences: 59808
Number of extensions: 369423
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)