Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00924
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   5.6  
At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily...    28   5.6  
At1g51810.1 68414.m05839 leucine-rich repeat protein kinase, put...    28   7.4  
At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family...    28   7.4  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    27   9.8  
At4g21400.1 68417.m03091 protein kinase family protein contains ...    27   9.8  

>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  KQTRNVDDSDTWKRSRRVDVF 5
           K+ ++ DD D W   RR+DVF
Sbjct: 123 KEVKSYDDDDIWGNYRRLDVF 143


>At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily
           protein contains TIGRfam TIGR01668: HAD superfamily
           (subfamily IIIA) phosphatase, TIGR01668 and TIGR01662:
           hydrolase, HAD-superfamily, subfamily IIIA
          Length = 343

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 332 PVLATPPGLSPESSPTRPVTL-TSQGDSLGGKKIIDSSKIEQFHSCLRFPMFANTTDSEK 156
           P+ + PP  S  SSP +  T   SQ  +L      DS  + QF S    P F+N    + 
Sbjct: 35  PICSPPPPSSSSSSPLQTTTTHRSQKQNLRLPTFEDSFLLYQFSSPTEDPGFSNRIPEQF 94

Query: 155 KHVNRNLI 132
               R L+
Sbjct: 95  DGEPRELV 102


>At1g51810.1 68414.m05839 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from (Arabidopsis thaliana); contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 843

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 12  STRRERFHVSESSTLRVCFHKT 77
           +T +E  HVS+S+TL+VC  KT
Sbjct: 124 NTIKEILHVSKSNTLQVCLVKT 145


>At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 480

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 305 SPESSPTRPVTLTSQGDSLGGKKIIDSSKIEQFHSCLRFPMFANTTDSEKK 153
           S  + P  P +L  + DS+  + + D    EQ H  +  P+F N  + +++
Sbjct: 110 SLNTRPPSPPSLPREKDSVEARVMEDDMNQEQLHGSMLPPLFVNGDECQQQ 160


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 371 SGGRFCEALLLLGPVLATPPGLSP 300
           S G  C + L +GPV+A+PPG  P
Sbjct: 920 SKGPSCVSPLGVGPVIASPPGEGP 943


>At4g21400.1 68417.m03091 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 711

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 317 PPGLSPESSPTRPVTLTSQGDSLGGKKII 231
           PP + P  SPT        G   GG K+I
Sbjct: 262 PPAIQPADSPTSAARTERTGKGKGGSKVI 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,527
Number of Sequences: 28952
Number of extensions: 267538
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)