Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00923
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    99   5e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    99   5e-22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = +3

Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
           WGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 67  WGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 41/67 (61%), Positives = 51/67 (76%)
 Frame = +1

Query: 55  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 234
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 235 HQTSAES 255
           HQTSAES
Sbjct: 60  HQTSAES 66



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/91 (37%), Positives = 55/91 (60%)
 Frame = +2

Query: 425 LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 604
           +  +VAA+GVP+L+ ARGH IE+IPE+P +     +   +     +     +     ++ 
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKV 183

Query: 605 TSLSVFVAGKGKMRNRRRIQRKGPLIIFNKD 697
            +     AGKGK+RNRR +QR+GPL++FN+D
Sbjct: 184 ANSRKLRAGKGKLRNRRHVQRRGPLVVFNED 214



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +1

Query: 508 LVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLR 624
           LVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LR
Sbjct: 152 LVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLR 190


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 40/46 (86%), Positives = 42/46 (91%)
 Frame = +3

Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
           WGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 67  WGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 42/67 (62%), Positives = 51/67 (76%)
 Frame = +1

Query: 55  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 234
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 235 HQTSAES 255
           HQTSAES
Sbjct: 60  HQTSAES 66



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/91 (37%), Positives = 55/91 (60%)
 Frame = +2

Query: 425 LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 604
           +  +VAA+GVP+L+ ARGH IE+IPE+P +     +   +     +     +     ++ 
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKV 183

Query: 605 TSLSVFVAGKGKMRNRRRIQRKGPLIIFNKD 697
            +     AGKGK+RNRR +QR+GPL++FN+D
Sbjct: 184 ANSRKLRAGKGKLRNRRHVQRRGPLVVFNED 214



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +1

Query: 508 LVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLR 624
           LVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LR
Sbjct: 152 LVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLR 190


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 356 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH 481
           +  PH  L + AP  QP   E     +V     P+    +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 116 APCTVSLFSEYTDTKGRATDRLISLL 39
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 54  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 164
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,987
Number of Sequences: 5004
Number of extensions: 51721
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)