Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00923
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 103 2e-22
07_01_0578 + 4295386-4296489,4297394-4297507 102 2e-22
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.51
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.89
10_02_0199 + 6668902-6669293,6669825-6669882 31 1.2
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636... 30 2.0
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 4.7
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 29 4.7
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 28 6.2
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 6.2
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.3
05_04_0292 + 19893895-19894983 28 8.3
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 8.3
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 103 bits (246), Expect = 2e-22
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +3
Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
WGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 70 WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 234
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 235 HQTSAES 255
HQTSAES
Sbjct: 63 HQTSAES 69
Score = 61.7 bits (143), Expect = 5e-10
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 425 LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 604
+ ++AAT VP+LV ARGH IE +PE P L + S S S
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP-LVVSDSIESIEKTAQSIKVLKQIGAYADAEK 185
Query: 605 TSLSVFV-AGKGKMRNRRRIQRKGPLIIFNKD 697
T SV + AGKGKMRNRR I RKGPLI++ +
Sbjct: 186 TKDSVAIRAGKGKMRNRRYINRKGPLIVYGTE 217
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 102 bits (245), Expect = 2e-22
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +3
Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
WGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 71 WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 240
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 241 TSAES 255
TSAES
Sbjct: 66 TSAES 70
Score = 58.4 bits (135), Expect = 5e-09
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +2
Query: 425 LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKS---RRSTRPNRLSSS*GASRHGLIS 595
+ ++AAT VP+LV ARGH IE +PELP + + ++++ ++ GA +
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 187
Query: 596 LRCTSLSVFVAGKGKMRNRRRIQRKGPLIIFNKD 697
+ GKGKMRNRR I RKGPLI++ +
Sbjct: 188 KDSVGIR---PGKGKMRNRRYINRKGPLIVYGTE 218
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.9 bits (69), Expect = 0.51
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 30 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 185
ASL N + P+F V L G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 30 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 185
ASL N I +PTF +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +3
Query: 216 REQGGWSPNQC*IWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 356
RE GG + + W TGRA A + R R GG R A N G R
Sbjct: 30 REGGGGAQS----WATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>09_03_0046 +
11862923-11863112,11863225-11863406,11863522-11863634,
11863894-11864140,11864333-11864452,11864601-11864604,
11864800-11864846,11864992-11865068,11865381-11865431,
11865519-11865567,11865694-11865718,11866226-11866344
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 374 ALAALAPSRQPPTAESG--LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRP 547
A+AAL + P A + G AA G+P LV+A I P+L P S +
Sbjct: 10 AIAALLRAAHVPPAPRARSIRGLAAARGLPPLVRATAAAIAPSSFCPYL-PRLSSARSFS 68
Query: 548 NRLSSS*GASRHGLIS 595
+ S S GAS G +S
Sbjct: 69 SSTSCSAGASLGGAVS 84
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 30 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 185
ASL N I +PT +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 216 REQGGWSPNQC*IWGTGRAVARIPRVRGGGT--HRSGQGAF 332
R + GW +Q + + + R P +GGG R GQG F
Sbjct: 1121 RREQGWDAHQAQVGAQHQNLPRFPPQQGGGNIGERQGQGQF 1161
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 267 VQYPRFSTGLVTSLLAHAVGLPRVL 193
V+ P TG S LA AVG+PRVL
Sbjct: 89 VENPHKKTGYSISELAEAVGIPRVL 113
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 30 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 185
ASL+ N ++ +PT V L ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 372 SWGRTYVHHDTCYRRHPDRTYEYHH 298
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 163 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 71
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 249 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 118
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,854,492
Number of Sequences: 37544
Number of extensions: 456559
Number of successful extensions: 1663
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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