Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00923
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               107   7e-24
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              32   0.52 
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               31   0.68 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.68 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.6  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           29   3.6  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.4  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.4  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   8.4  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   28   8.4  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  107 bits (258), Expect = 7e-24
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +3

Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
           WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 64  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +1

Query: 64  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 243
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 244 SAES 255
           SAES
Sbjct: 60  SAES 63



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 38/89 (42%), Positives = 50/89 (56%)
 Frame = +2

Query: 434 SVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRCTSL 613
           ++AA+ +PAL+ ARGH IEKI E+P +        T+ +       A        +C   
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDS 183

Query: 614 SVFVAGKGKMRNRRRIQRKGPLIIFNKDQ 700
               AGKGKMRNRR + RKGPLII+N DQ
Sbjct: 184 KKIRAGKGKMRNRRTVMRKGPLIIYNNDQ 212


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +3

Query: 225 GGWSPNQC*IWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 386
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +3

Query: 225 GGWSPNQC*IWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 386
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 268
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 360 TYVHHDTCYRRHPDRTYEYHHHGHA 286
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -1

Query: 363 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 259
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 351 HHDTCYRRHPDRTYEY-HHHGHAEFGRQHVQYPRFST 244
           HH   + RH DR + + HHH H +   +   + + ST
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHHHHKHHHKAANHHKLST 376


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 351 HHDTCYRRHPDRTYEYHHH 295
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 131  GRGLAAPCTVSLFSEYTDTKGRATDRLI 48
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 336 YRRHPDRTYEYHHHGHAEFGRQHVQYPR 253
           Y +HP  T+ YH H      R H Q+P+
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQ 258



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 336 YRRHPDRTYEYHHHGHAEFGRQHVQYPR 253
           Y +HP  T+ YHH  H +   ++ Q+P+
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQ 439


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 357 YVHHDTCYRRHPDRTYEYHHHGH 289
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 351 HHDTCYRRHPDRTYEYHHH 295
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 372 SWGRTY----VHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPRFSTGLV 235
           ++ RTY     H D   +RH D   +  H  +   G +  ++ RFS GLV
Sbjct: 752 TYPRTYEQVRAHIDAVIQRHVDSIEDPAHIAYLPTGEEIEEFQRFSLGLV 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,291,255
Number of Sequences: 59808
Number of extensions: 439988
Number of successful extensions: 1517
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)