Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00923
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   100   1e-21
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  100 bits (239), Expect = 1e-21
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +3

Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
           WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 33/64 (51%), Positives = 43/64 (67%)
 Frame = +1

Query: 64  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 243
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 244 SAES 255
           SAES
Sbjct: 62  SAES 65



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/91 (31%), Positives = 51/91 (56%)
 Frame = +2

Query: 425 LGGSVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRC 604
           +  ++AA+G+PAL+QARGH+I+++ E+P +   K     +          S       + 
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKV 182

Query: 605 TSLSVFVAGKGKMRNRRRIQRKGPLIIFNKD 697
            +     AGKGK+RNR+  Q+ GP++I+ +D
Sbjct: 183 YNSKRNRAGKGKLRNRQHKQKLGPVVIYGQD 213



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +1

Query: 508 LVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLR 624
           LVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R R
Sbjct: 151 LVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNR 189


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 351 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 268
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,502
Number of Sequences: 27780
Number of extensions: 315924
Number of successful extensions: 1004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)