Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00923
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 100 8e-22
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 100 8e-22
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.3
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 29 3.0
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.2
At3g18640.1 68416.m02368 zinc finger protein-related contains si... 28 5.2
At1g28080.1 68414.m03437 expressed protein 28 5.2
At5g01010.1 68418.m00001 expressed protein 28 6.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 9.1
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 100 bits (240), Expect = 8e-22
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +3
Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
WGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 73 WGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = +1
Query: 58 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 231
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 232 GHQTSAES 255
GHQTSAES
Sbjct: 65 GHQTSAES 72
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 434 SVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRCTSL 613
++AAT VPALV ARGH IE +PE+P L + S + +
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMP-LVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKN 191
Query: 614 SVFV-AGKGKMRNRRRIQRKGPLIIFNKD 697
S+ + GKGKMRNRR I RKGPL++F +
Sbjct: 192 SIGIRPGKGKMRNRRYISRKGPLVVFGTE 220
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 100 bits (240), Expect = 8e-22
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +3
Query: 255 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 392
WGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 72 WGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Frame = +1
Query: 49 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 222
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 223 KEAGHQTSAES 255
K+AGHQTSAES
Sbjct: 61 KKAGHQTSAES 71
Score = 59.3 bits (137), Expect = 2e-09
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +2
Query: 434 SVAATGVPALVQARGHIIEKIPELPWL*PTKSRRSTRPNRLSSS*GASRHGLISLRCTSL 613
++AAT VPALV ARGH IE +PE+P L + S + +
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMP-LVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKN 190
Query: 614 SVFV-AGKGKMRNRRRIQRKGPLIIFNKD 697
S+ + GKGKMRNRR I RKGPL+++ +
Sbjct: 191 SIGIRPGKGKMRNRRYISRKGPLVVYGTE 219
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 73 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 351 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPRF 250
HH Y H Y Y +HGH +F ++ +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKFKHGKFKHGKF 155
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 124 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 124 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 219
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At3g18640.1 68416.m02368 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 676
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 359 VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPEL 505
V+P++A P GLG S A GVPA+ ++ +E+I E+
Sbjct: 488 VQPNQATTQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISNVEEIQEV 536
>At1g28080.1 68414.m03437 expressed protein
Length = 291
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 115 AAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESGVLD 267
++KP + AP RP ++D V+ + NS C E G S+E VLD
Sbjct: 179 SSKPWIPQYMAPFRPSSLSDRDVT-NNNSLSRSCCVDEGGAGPSSEFRVLD 228
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 249 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 118
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 351 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 268
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,971
Number of Sequences: 28952
Number of extensions: 308584
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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