Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00922
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U28731-6|AAA68295.1|  160|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical
           protein F54B8.2 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 294 IYTPRDRDQNFIIEKNIPPYASHVESLKNHV 202
           +Y    RDQ+FI++KN    AS  E+ + ++
Sbjct: 83  VYQSSSRDQSFILQKNFVKVASFCEAFRYYL 113


>U28731-6|AAA68295.1|  160|Caenorhabditis elegans Hypothetical
           protein F12A10.2 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 139 WNDIILIEYQDCLCVTLLLHLYMIF*TFDMRSIRGDIFFNNKIL 270
           WN    ++Y+ C+ +   L L M      M+ + GDI+  N ++
Sbjct: 13  WNSFGGLDYRQCITIMAQLVLAMRIANDKMKFVHGDIYMMNILI 56


>U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical
           protein F48B9.4 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 312 FTANLLIYTPRDRDQNFIIEKNIPPYASHV 223
           FTAN++  TPR +        ++P YA HV
Sbjct: 20  FTANVVDATPRSQGNMMRYGNSLPAYAPHV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,041
Number of Sequences: 27780
Number of extensions: 251183
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)