Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00921
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    27   0.16 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 519 SMGGHGALVSTLRNPGQYKSVSAFAP 596
           SMGGHG+L+S   N     S S + P
Sbjct: 50  SMGGHGSLLSPSGNTPNKSSTSPYPP 75


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 671 PFTLIFSQISTKSFHSPWTSTWI 603
           P  L F++I   SF+S WT  W+
Sbjct: 279 PGVLGFNEIC--SFYSDWTRVWL 299


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 347 SPSILTPRGEVSGPTTITPCSAA 279
           +PS++ P    S PTT T  ++A
Sbjct: 240 APSVMYPHLNRSSPTTATAIASA 262


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 347 SPSILTPRGEVSGPTTITPCSAA 279
           +PS++ P    S PTT T  ++A
Sbjct: 188 APSVMYPHLNRSSPTTATAIASA 210


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 347 SPSILTPRGEVSGPTTITPCSAA 279
           +PS++ P    S PTT T  ++A
Sbjct: 371 APSVMYPHLNRSSPTTATAIASA 393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,035
Number of Sequences: 336
Number of extensions: 4946
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)