Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00921
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.8  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   4.8  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   8.4  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.4  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   8.4  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 FSIYLPPQAEGGDVKLPLLYY 220
           F+ Y+PP+  GGD+ +P  +Y
Sbjct: 20  FNGYVPPEQNGGDIVVPKDFY 40


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 274 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 375
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 263  LVSRGMQPNMV*LS*VLILRHVELRLMEMIHHG 361
            L+S  +QPN++ L+   +L+H+  R  + + HG
Sbjct: 1285 LISSALQPNLLELTISHMLQHIGQRAFQTLIHG 1317


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 510 MGHSMGGHGALVSTLRNPGQYKSVSAFAPICNP 608
           +GHSMGG+ + V  ++ P + + +   +P+  P
Sbjct: 177 VGHSMGGYLSAVYAMQYPERVEKLLLVSPVAIP 209


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 298 IVVGPDTSPRGVKIDGDDSSWDFGVSA 378
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 473 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 342
           A + K+Y +  K L PIL  LF+GS+ +SK K  LT +      P
Sbjct: 98  ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 299 ITPCSAAYLWKPDLV*SFVHYKLDQTNNIEVVISHHPLLPEG 174
           I+P  A Y + PD+  +F H      N ++++   H L+ EG
Sbjct: 211 ISPRGAGYTFGPDIAEAFNH-----NNGLDLIARAHQLVMEG 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,555
Number of Sequences: 5004
Number of extensions: 75908
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)