Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00921
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 99 2e-21
01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455... 62 4e-10
12_02_1237 + 27245411-27245842 32 0.54
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 32 0.54
01_06_0087 + 26299692-26299971,26301721-26301933,26302027-263024... 30 2.2
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782... 29 2.9
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 29 3.8
04_01_0575 - 7454421-7455707 29 5.0
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 28 8.8
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 28 8.8
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 99 bits (238), Expect = 2e-21
Identities = 44/66 (66%), Positives = 50/66 (75%)
Frame = +3
Query: 513 GHSMGGHGALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLGEDKSKWAEWDATE 692
GHSMGGHGAL L+N +YKSVSAF+P+ NP CPWG KAFS YLG KS W E+DAT
Sbjct: 29 GHSMGGHGALTIYLKNTDKYKSVSAFSPVVNPINCPWGQKAFSNYLGPAKSDWKEYDATC 88
Query: 693 LVKKYN 710
L+KK N
Sbjct: 89 LIKKCN 94
>01_07_0129 +
41243686-41243853,41243936-41244053,41245485-41245532,
41245756-41245787
Length = 121
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +2
Query: 68 SLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQ 247
+L+ S K+FGG+ + H S+ L C M FS++LPP LP+LY+LSGLTC+++
Sbjct: 13 ALEQMSRTKMFGGHNLRFRHHSATLGCPMTFSVFLPPSPAS---DLPVLYWLSGLTCNDE 69
Query: 248 NF 253
NF
Sbjct: 70 NF 71
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +1
Query: 256 TKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGV 372
TK+G QR AA HG+ +V PDTSPRG+ I+G+ SWDFGV
Sbjct: 73 TKAGAQRAAAAHGIALVAPDTSPRGLNIEGEADSWDFGV 111
>12_02_1237 + 27245411-27245842
Length = 143
Score = 31.9 bits (69), Expect = 0.54
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 355 SWDFGVSAGFYLDATNEPWNNN 420
++DFG+ AGF++ TN P+N +
Sbjct: 42 AYDFGIPAGFFVPGTNNPYNGD 63
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.9 bits (69), Expect = 0.54
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 355 SWDFGVSAGFYLDATNEPWNNNYRMGSYLN 444
SW +G+ G Y + N PW +N +++N
Sbjct: 1287 SWQYGLDQGLYSEGKNYPWFSNGSSNAFIN 1316
>01_06_0087 +
26299692-26299971,26301721-26301933,26302027-26302464,
26304500-26304708
Length = 379
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 531 HGALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLGEDKSKWAEWDAT 689
+GA+ S + PG+ +A C + P G + + ED S + WD T
Sbjct: 297 YGAMTSIFQAPGKLGFTNALGSCCGNQSVPCGKAGCT--VCEDPSTYVSWDGT 347
>01_06_0311 -
28377414-28377623,28377758-28377856,28378116-28378253,
28378697-28378827,28378920-28379066,28379164-28379293,
28379625-28379654,28380138-28380416
Length = 387
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 501 NWYMGHSMGGHGALVSTLRNPGQYKSVSAFAPICNPS 611
++ +G SMGG AL L+ P ++ V AP+C S
Sbjct: 205 HFLLGQSMGGAVALKVHLKQPKEWDGVLLVAPMCKIS 241
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 630 KAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLL 731
K F ++ KW+E+D+ +K NG P+ LL
Sbjct: 180 KRFDSFMLSHGFKWSEFDSCVYIKFVNGSPIYLL 213
>04_01_0575 - 7454421-7455707
Length = 428
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 167 YLPPQAE-GGDVKLPLLYYLSGLTCSEQNFTLNLVSRGMQPNMV 295
+LP A+ GGD LPLL YL+ LT +++ SR P +V
Sbjct: 50 HLPANADDGGDTPLPLLPYLAHLTGKHYMSFVSVRSRRHAPWIV 93
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 352 SSWDFGVSAGFYLDATNEPWN 414
SSWD V GF AT PW+
Sbjct: 297 SSWDNPVPGGFKFTATKAPWS 317
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 341 SILTPRGEVSGPTTITPCSAAYLWKPDLV*SFVHYKLDQTNNIE 210
S + P G P +P + Y+W V F HY + N+E
Sbjct: 256 SAIPPHGFFPPPVAASPQAHPYMWGAQGVHPFNHYPMLANGNVE 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,955,246
Number of Sequences: 37544
Number of extensions: 482729
Number of successful extensions: 1112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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