Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00921
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical ...   103   1e-22
AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical...   103   1e-22
Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z82052-4|CAB04827.2|  374|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    28   5.9  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    28   5.9  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    28   5.9  

>AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
 Frame = +3

Query: 513 GHSMGGHGALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLG-EDKSKWAEWDAT 689
           GHSMGGHGAL   LRN  +++S+SAFAPICNP   PWG KA +GYLG EDKS W ++DA+
Sbjct: 148 GHSMGGHGALTIGLRNSSKFQSISAFAPICNPITVPWGQKALTGYLGDEDKSTWNQYDAS 207

Query: 690 ELVKKYNGPPLTLL 731
           E++K Y+GP   +L
Sbjct: 208 EVLKAYSGPKREIL 221



 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 45/91 (49%), Positives = 63/91 (69%)
 Frame = +1

Query: 259 KSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSY 438
           KSGFQ++A++H ++VV PDTSPRGV +DGD  SWDFG  AGFY++AT E W  NYRM  Y
Sbjct: 64  KSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYDY 123

Query: 439 LNVELYDLILKAFCNVVDPNRIGIWDTAWEG 531
           +  EL + ++ +    +D  +IGI+  +  G
Sbjct: 124 IVKELLEEVVPSVA-PIDLAKIGIFGHSMGG 153



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +2

Query: 77  LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNF 253
           L SSN+ F G Q VY HASS  +C+M F +Y+P      D KLP L+YLSGLTC+  NF
Sbjct: 5   LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANF 61


>AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
 Frame = +3

Query: 513 GHSMGGHGALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLG-EDKSKWAEWDAT 689
           GHSMGGHGAL   LRN  +++S+SAFAPICNP   PWG KA +GYLG EDKS W ++DA+
Sbjct: 148 GHSMGGHGALTIGLRNSSKFQSISAFAPICNPITVPWGQKALTGYLGDEDKSTWNQYDAS 207

Query: 690 ELVKKYNGPPLTLL 731
           E++K Y+GP   +L
Sbjct: 208 EVLKAYSGPKREIL 221



 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 45/91 (49%), Positives = 63/91 (69%)
 Frame = +1

Query: 259 KSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSY 438
           KSGFQ++A++H ++VV PDTSPRGV +DGD  SWDFG  AGFY++AT E W  NYRM  Y
Sbjct: 64  KSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYDY 123

Query: 439 LNVELYDLILKAFCNVVDPNRIGIWDTAWEG 531
           +  EL + ++ +    +D  +IGI+  +  G
Sbjct: 124 IVKELLEEVVPSVA-PIDLAKIGIFGHSMGG 153



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +2

Query: 77  LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNF 253
           L SSN+ F G Q VY HASS  +C+M F +Y+P      D KLP L+YLSGLTC+  NF
Sbjct: 5   LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANF 61


>Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical
           protein ZC373.6 protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 325 RGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLNVELYDLILKAFCNVVDPNR 501
           +G+ I G    +   +S G+   +T +P+N N+       V++ D  +  F  V+ P R
Sbjct: 159 QGLDIHGGSGGYHRALSGGYLPPSTYDPYNVNWHSYGDEGVKMKDKAISVFRRVIAPGR 217


>Z82052-4|CAB04827.2|  374|Caenorhabditis elegans Hypothetical
           protein T25E12.9 protein.
          Length = 374

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 659 IFSQISTKSFHSPWTSTWITNRSKSAY*LVLTR-IPQSRN*STMPSHAVSHIPILLGSTT 483
           +F+  ST +  +  TS  +++ +K    ++ TR +P S   STMP+HA  ++   +G T 
Sbjct: 64  VFATSSTSTLQTMTTSDSLSSHTKPDTTIISTRTLPIS---STMPTHASDNVTCAVGFTY 120

Query: 482 LQK 474
           + K
Sbjct: 121 VNK 123


>Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical
           protein T16G1.5 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 63  WTACN*NRPIKFLVVIKKCILMHHL 137
           WT  N N P K ++ +  CI +HHL
Sbjct: 65  WTIPNENLPEKIILKLTSCINVHHL 89


>Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical
           protein C05C10.4 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 327 TWRSIRTYDNYTMFGCIPLETRFSVKFCSLQVRPDK*YRSGNFTSP 190
           TW+  R Y N TM+  +P           +   P K +  GNF +P
Sbjct: 212 TWKCQRAYFNRTMYAKLPWYNEELYYQAQVTYAPVKGFLEGNFENP 257


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 661 HLLECPHNCPTNIYSLMVECWHENIER 687


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 457 HIIQHSNNCPFCNYYSMVHLWHLNKNR 377
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,735,975
Number of Sequences: 27780
Number of extensions: 426247
Number of successful extensions: 1087
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)