Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00921
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...   102   2e-22
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    31   0.60 
At1g03890.1 68414.m00373 cupin family protein similar to Arabido...    30   1.4  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    28   7.3  
At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    27   9.7  
At5g06700.1 68418.m00757 expressed protein strong similarity to ...    27   9.7  

>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score =  102 bits (245), Expect = 2e-22
 Identities = 46/73 (63%), Positives = 54/73 (73%)
 Frame = +3

Query: 513 GHSMGGHGALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLGEDKSKWAEWDATE 692
           GHSMGGHGAL   LRN  +YKSVSAFAPI NP  C WG KAF+ YLG++K+ W E+DAT 
Sbjct: 150 GHSMGGHGALTIYLRNLDKYKSVSAFAPITNPINCAWGQKAFTNYLGDNKAAWEEYDATC 209

Query: 693 LVKKYNGPPLTLL 731
           L+ KYN    T+L
Sbjct: 210 LISKYNNLSATIL 222



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 39/73 (53%), Positives = 52/73 (71%)
 Frame = +1

Query: 259 KSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSY 438
           KSG QR A+ HG+ +V PDTSPRG+ ++G+  S+DFGV AGFYL+AT E W  N+RM  Y
Sbjct: 67  KSGAQRAASTHGIALVAPDTSPRGLNVEGEADSYDFGVGAGFYLNATQEKW-KNWRMYDY 125

Query: 439 LNVELYDLILKAF 477
           +  EL  L+ + F
Sbjct: 126 VVKELPKLLSENF 138



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/58 (53%), Positives = 38/58 (65%)
 Frame = +2

Query: 86  SNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFTL 259
           S K+F GY K Y H S  L C M FSIY PP A     K P+LY+LSGLTC+++NF +
Sbjct: 10  STKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSH-KSPVLYWLSGLTCTDENFII 66


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 371 TPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKP----DLV*SFVHY 237
           +PK  DES P +     + S P    P     LWKP    +LV  F HY
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWKPNVTINLVDDFTHY 230


>At1g03890.1 68414.m00373 cupin family protein similar to
           Arabidopsis thaliana 12S seed storage proteins SP|P15455
           [gi|808937] and SP|P15456, Brassica napus cruciferin
           storage protein, gi|762919, and others; contains Pfam
           profile PF00190 Cupin; Location of ESTs YAY049-3' end,
           gb|Z26364 and YAY049-5' end, gb|Z26363
          Length = 451

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 35  FPEAHQKSNMDSLQLESSNKIFGGYQKVYSHASSELKC 148
           FP A   S ++SL    + K   G  +V+ H S EL+C
Sbjct: 32  FPNACHFSQINSLAPAQATKFEAGQMEVWDHMSPELRC 69


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 DGDDSSWDFGVSAGFYLDATN 402
           DGD   WDF V   +Y D TN
Sbjct: 235 DGDVYGWDFNVPFDYYGDVTN 255


>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 507 YMGHSMGGHGALVSTLRNPGQYKSVSAFAPICNPSACP 620
           ++GH +    A+   ++N G  + +  F  IC    CP
Sbjct: 575 FLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCP 612


>At5g06700.1 68418.m00757 expressed protein strong similarity to
           unknown protein (emb|CAB82953.1)
          Length = 608

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 533 MPSHAVSHIPILLGSTTLQKAFKIKSYNSTFK 438
           M S AV ++PI  G TT   A  IKS+ S  K
Sbjct: 1   MASDAVKYMPIHGGGTTATTAADIKSFFSALK 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,791
Number of Sequences: 28952
Number of extensions: 399250
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)