Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   3.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 509 TRCDDTNART*SGYTSFAKRSKPCPVAQRIWLLDTDMFRI*SDFLNFPHLNNIYSEPN 336
           TR   T +R    Y +       C     +W   T + +I S  L FP+ +  ++ P+
Sbjct: 42  TRISSTVSRNTDTYPTLETCRLVCGKYGALWPQPTSVTKISSTLLKFPYRSIKFNIPD 99


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 315 KNLATKYPDIATCAALYA 262
           K+L  KYP IA C  + A
Sbjct: 38  KDLLQKYPPIANCKLVQA 55


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 546 ITHAHLHRLHKFFST 590
           +TH H  R H +F T
Sbjct: 68  VTHWHSPRFHAYFPT 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,859
Number of Sequences: 336
Number of extensions: 3292
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)