Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    42   7e-05
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    40   4e-04
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   4.9  

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 25/75 (33%), Positives = 37/75 (49%)
 Frame = +2

Query: 284 AISGYLVARFFLDLRRMGLVPSKCYLNEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRK 463
           A+   LV   F +  R GL    C  +  +   +++   YL    K+ EL+DTV   L+K
Sbjct: 101 ALLALLVEEVFRNYMRNGLF--YCVCDSRHFTQRLVTLYYLNYLTKYLELMDTVFLFLKK 158

Query: 464 KYSQITFLHLYHHTV 508
           K   + FLH YHH +
Sbjct: 159 K--PLAFLHCYHHGI 171


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = +2

Query: 362 NEENSRNQIIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
           NE+     ++F  Y    +KF EL DT   VLRKK   + FLH YHH
Sbjct: 105 NEKAWTQPLVFLYYCAYISKFLELTDTFFLVLRKK--PLQFLHCYHH 149


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 481 VLAFVSSHRVVIATWAMLKYWPSHTLIYIGFINSLV 588
           VLAFVS+   +    +  +Y+P  +L+ + FI   V
Sbjct: 149 VLAFVSAASNIFEWLSATRYYPQSSLLRVSFIFKFV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,936
Number of Sequences: 5004
Number of extensions: 53953
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)