Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00920
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         31   0.95 
12_02_0427 + 18973358-18973364,18974195-18974300,18974763-189748...    27   8.9  
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686...    27   8.9  
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733...    27   8.9  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 386 IIFGTYLYLTAKFSELLDTVCFVLRKKYSQITFLHLYHH 502
           + F  +++  +K  EL DT+  +L ++   +T LH+YHH
Sbjct: 118 VFFWAHVFYLSKVYELGDTLLILLGRR--PLTLLHVYHH 154


>12_02_0427 +
           18973358-18973364,18974195-18974300,18974763-18974855,
           18974978-18975173,18975362-18975540,18975882-18976135,
           18976378-18976538,18976633-18976800
          Length = 387

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 87  KSNYWDLNKSKFAVIDQLPLMGSVSPVLTVLAIYLI 194
           +S+YW +   ++  + QLP     SPVL+ LA+Y I
Sbjct: 190 QSHYWGVGFLRYFQVKQLPNFLLASPVLS-LAVYSI 224


>04_01_0522 -
           6865049-6865131,6865214-6865388,6865692-6865877,
           6866489-6866599,6866678-6866890,6867446-6867553,
           6867632-6867773,6867855-6868951,6871287-6871559
          Length = 795

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 48  RHNSIMDGTMFGTKSNYWDLNKSKFAVIDQLPLM 149
           R NSIMD       +N+   N  + ++ DQL LM
Sbjct: 263 RQNSIMDSPYVSRNNNHHMKNVDRLSLADQLALM 296


>03_03_0116 -
           14572258-14572881,14573026-14573127,14573253-14573345,
           14573445-14573591,14573690-14573780,14573873-14573961,
           14574061-14574126,14574241-14574762
          Length = 577

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 534 EVLAITHAHLHRLHKFFSTWLH 599
           E +   H + H LH ++ TWLH
Sbjct: 195 EAIDPRHRYGHNLHYYYDTWLH 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,202
Number of Sequences: 37544
Number of extensions: 315952
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)